Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 2.7e-169 598.6 299 100.0
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.2e-148 530.0 298 90.9
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.3e-147 526.6 298 89.9
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 7.8e-145 517.3 298 88.3
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.0e-136 488.8 300 82.3
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 6.2e-134 481.1 294 82.7
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.1e-133 480.3 298 82.9
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 4.4e-132 474.9 295 81.7
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 8.1e-126 454.1 293 81.2
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.1e-125 453.8 293 79.5
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 5.2e-125 451.4 293 77.8
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.2e-123 446.0 293 77.5
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 6.4e-123 444.5 299 77.9
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 8.7e-120 434.1 307 73.3
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.5e-119 432.6 299 74.9
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 7.3e-119 431.0 259 81.5
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.1e-118 429.5 289 74.0
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 2.8e-118 429.1 296 74.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.4e-117 426.8 305 71.1
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 6.9e-117 424.5 295 72.2
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 9.0e-117 424.1 293 74.1
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.5e-116 423.3 274 77.7
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.5e-116 423.3 251 81.3
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.8e-116 421.4 249 79.5
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 5.8e-116 421.4 249 79.5
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 7.6e-116 421.0 305 71.5
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.2e-115 419.5 288 71.9
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.9e-115 419.1 265 76.6
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.9e-115 419.1 242 83.1
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 4.9e-115 418.3 243 82.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 4.9e-115 418.3 247 81.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.9e-115 418.3 299 72.6
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 4.9e-115 418.3 294 72.4
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 6.4e-115 417.9 286 72.0
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 8.4e-115 417.5 247 82.2
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 8.4e-115 417.5 249 80.7
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.4e-114 416.8 299 72.6
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.4e-114 416.8 241 82.6
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.4e-114 416.0 273 73.6
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.4e-114 416.0 274 72.3
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.4e-114 416.0 243 81.9
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.4e-114 416.0 288 74.3
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.4e-114 416.0 308 67.5
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 3.2e-114 415.6 243 79.4
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 3.2e-114 415.6 243 82.3
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 3.2e-114 415.6 312 69.6
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 4.2e-114 415.2 243 81.5
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 4.2e-114 415.2 307 69.7
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 4.2e-114 415.2 312 69.6
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 7.1e-114 414.5 246 78.0
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 7.1e-114 414.5 309 67.6
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 2.1e-113 412.9 297 71.4
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.7e-113 412.5 272 72.1
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.7e-113 412.5 304 69.4
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 4.6e-113 411.8 248 80.2
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 7.9e-113 411.0 243 80.7
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 7.9e-113 411.0 270 75.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.0e-112 410.6 262 75.6
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.0e-112 410.6 250 75.6
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.3e-112 410.2 246 80.1
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.8e-112 409.8 287 70.7
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.9e-112 408.7 292 68.5
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 5.1e-112 408.3 281 73.7
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 6.7e-112 407.9 305 68.9
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 6.7e-112 407.9 285 71.9
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.5e-111 406.0 274 69.7
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 5.6e-111 404.8 242 78.9
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 9.6e-111 404.1 292 68.2
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.6e-110 403.3 243 77.4
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.1e-110 402.9 263 74.5
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.1e-109 400.6 246 77.6
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-109 400.6 261 75.9
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.1e-109 400.6 241 77.2
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.4e-109 400.2 306 67.3
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.4e-109 399.4 246 77.2
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.4e-109 399.4 242 77.7
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.4e-109 399.4 243 77.0
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 3.1e-109 399.1 243 77.8
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.5e-108 396.7 254 73.6
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.9e-107 392.5 314 63.4
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.4e-106 389.4 390 55.4
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 4.2e-106 388.7 283 69.3
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 5.5e-106 388.3 274 68.6
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 9.3e-106 387.5 303 66.3
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.2e-105 387.1 294 65.0
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.2e-105 387.1 288 66.7
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 3.5e-105 385.6 299 66.2
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.5e-105 385.6 249 73.9
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 6.0e-105 384.8 254 71.7
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.0e-104 384.0 254 72.8
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 8.7e-104 380.9 316 63.0
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 3.3e-103 379.0 251 74.9
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.5e-100 370.2 291 68.4
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 4.9e-99 365.2 246 70.3
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.7e-97 359.4 256 69.5
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 2.7e-97 359.4 289 64.4
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.3e-96 356.3 285 65.6
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 3.0e-96 355.9 370 54.6
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.0e-96 355.9 212 79.2
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 6.9e-93 344.7 260 63.1
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 6.9e-93 344.7 307 62.2
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 4.5e-92 342.0 212 73.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.2e-91 339.7 308 60.1
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.9e-91 339.3 272 61.8
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 6.5e-91 338.2 249 68.3
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.2e-90 335.5 249 67.5
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 2.2e-86 323.2 212 75.9
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 4.1e-85 318.9 257 58.4
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.2e-84 317.4 247 64.4
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.3e-78 297.4 231 64.9
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.1e-77 294.3 261 59.4
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.6e-76 289.7 242 57.9
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 8.5e-75 284.6 167 82.6
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 8.5e-75 284.6 212 62.7
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 2.4e-69 266.5 176 73.9
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 1.7e-67 260.4 164 75.0
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 6.5e-67 258.5 224 59.8
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 3.2e-66 256.1 251 53.8
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 5.5e-66 255.4 247 49.8
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.7e-62 243.8 159 74.2
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 4.8e-62 242.3 141 83.0
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.9e-58 230.3 191 62.8
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.7e-57 226.5 257 42.4
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.0e-56 224.6 206 59.7
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.0e-56 224.6 137 78.1
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-56 223.8 272 50.0
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.0e-55 220.3 137 77.4
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.3e-51 207.6 130 76.2
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 2.9e-51 206.5 238 45.0
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.0e-48 198.0 150 62.0
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.3e-48 196.8 126 77.8
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.5e-47 194.1 116 75.9
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.8e-45 187.2 100 86.0
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 2.4e-45 186.8 110 81.8
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 4.1e-45 186.0 136 67.6
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 4.1e-45 186.0 136 67.6
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 5.4e-45 185.7 109 78.9
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.6e-44 184.1 111 74.8
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.1e-41 173.7 171 55.6
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 6.1e-41 172.2 244 38.1
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-40 171.0 164 56.1
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 2.2e-38 163.7 217 41.9
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 5.4e-37 159.1 110 68.2
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.7e-36 156.8 218 41.3
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.7e-36 156.8 92 79.3
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.2e-33 147.9 82 76.8
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.5e-31 141.0 76 85.5
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 2.0e-31 140.6 75 82.7
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 4.9e-30 136.0 111 59.5
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.4e-29 133.7 76 80.3
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 1.5e-26 124.4 66 84.8
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 6.8e-24 115.5 56 87.5
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 5.8e-23 112.5 243 32.1
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 9.9e-23 111.7 61 82.0
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 8.3e-22 108.6 82 62.2
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.9e-21 107.5 58 79.3
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 1.9e-18 97.4 81 63.0
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 2.1e-17 94.0 53 75.5
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.1e-16 91.7 50 80.0
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.0e-15 87.4 114 43.0
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 2.9e-14 83.6 48 72.9
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.1e-13 81.6 59 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 5.6e-10 69.3 102 39.2
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 9.6e-10 68.6 45 68.9
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 2.6e-07 60.5 75 45.3


User provided reference genes

Program Settings