Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G026100 Glycine max HOM05D007438 ORTHO05D009395 1.0e-148 530.0 262 100.0
Glyma.02G288700 Glycine max HOM05D007438 ORTHO05D009395 9.2e-134 480.3 262 91.2
VMungo1215G1664 Vigna mungo HOM05D007438 ORTHO05D009395 5.8e-112 407.9 250 82.8
Ca_06297_v3 Cicer arietinum L. HOM05D007438 ORTHO05D009395 2.7e-109 399.1 264 76.5
Medtr5g091960 Medicago truncatula HOM05D007438 ORTHO05D009395 6.7e-108 394.4 263 74.9
TPR.G12671 Trifolium pratense HOM05D007438 ORTHO05D009395 1.6e-106 389.8 264 73.9
Lalb_Chr10g0106871 Lupinus albus HOM05D007438 ORTHO05D009395 8.4e-103 377.5 261 75.5
Phvul.008G264700 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 4.2e-102 375.2 262 73.7
arahy.Tifrunner.gnm1.ann1.2XI8FI Arachis hypogaea HOM05D007438 ORTHO05D009395 4.6e-93 345.1 281 65.1
arahy.Tifrunner.gnm1.ann1.9R49YU Arachis hypogaea HOM05D007438 ORTHO05D009395 4.6e-93 345.1 281 65.1
LjContig00310g0012276 Lotus japonicus HOM05D007438 ORTHO05D009395 6.7e-92 341.3 263 68.1
Psat2g015640 Pisum sativum HOM05D007438 ORTHO05D009395 1.9e-86 323.2 266 65.0
arahy.Tifrunner.gnm1.ann1.K6S8U8 Arachis hypogaea HOM05D007438 ORTHO05D009395 1.1e-83 313.9 281 61.2
GSVIVG01020783001 Vitis vinifera HOM05D007438 ORTHO05D009395 5.2e-68 261.9 265 51.7
Cfa021395 Carpinus fangiana HOM05D007438 ORTHO05D009395 8.8e-68 261.2 312 50.6
TAR629G3405 Trochodendron aralioides HOM05D007438 ORTHO05D009395 2.8e-66 256.1 263 50.6
CiPaw.03G193300 Carya illinoinensis HOM05D007438 ORTHO05D009395 3.7e-66 255.8 300 48.7
Duzib264G0748 Durio zibethinus HOM05D007438 ORTHO05D009395 4.8e-66 255.4 266 52.6
Thecc.01G156400 Theobroma cacao HOM05D007438 ORTHO05D009395 7.0e-65 251.5 266 53.8
QL08p043052 Quercus lobata HOM05D007438 ORTHO05D009395 1.6e-64 250.4 308 47.1
arahy.Tifrunner.gnm1.ann1.AN6F3M Arachis hypogaea HOM05D007438 ORTHO05D009395 8.5e-63 244.6 211 63.0
COL.COLO4_33655 Corchorus olitorius HOM05D007438 ORTHO05D009395 2.7e-61 239.6 253 51.8
Ciclev10016256m.g Citrus clementina HOM05D007438 ORTHO05D009395 8.0e-61 238.0 273 50.5
Gohir.A09G003800 Gossypium hirsutum HOM05D007438 ORTHO05D009395 1.5e-59 233.8 266 49.2
Gohir.D09G003400 Gossypium hirsutum HOM05D007438 ORTHO05D009395 2.0e-59 233.4 266 49.6
Phvul.003G195300 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 2.0e-59 233.4 157 78.3
Gorai.006G004700 Gossypium raimondii HOM05D007438 ORTHO05D009395 7.5e-59 231.5 266 49.2
Manes.01G129800 Manihot esculenta HOM05D007438 ORTHO05D009395 2.0e-56 223.4 254 49.6
MBI06_g16570_MAGBIO Magnolia biondii HOM05D007438 ORTHO05D009395 3.5e-56 222.6 270 46.7
Eucgr.A01949 Eucalyptus grandis HOM05D007438 ORTHO05D009395 1.7e-55 220.3 266 48.5
PGR042G1218 Punica granatum HOM05D007438 ORTHO05D009395 8.6e-55 218.0 271 48.3
Potri.014G141500 Populus trichocarpa HOM05D007438 ORTHO05D009395 2.5e-54 216.5 273 48.7
vmacro09194 Vaccinium macrocarpon HOM05D007438 ORTHO05D009395 3.3e-54 216.1 267 47.6
Actinidia30518 Actinidia chinensis HOM05D007438 ORTHO05D009395 7.2e-54 214.9 273 47.6
MSTRG.6772 Avicennia marina HOM05D007438 ORTHO05D009395 7.2e-54 214.9 267 46.8
Cpa.g.sc50.57 Carica papaya HOM05D007438 ORTHO05D009395 9.5e-54 214.5 290 45.5
ClCG09G022220 Citrullus lanatus HOM05D007438 ORTHO05D009395 3.6e-53 212.6 269 46.8
CAN.G803.12 Capsicum annuum HOM05D007438 ORTHO05D009395 1.4e-52 210.7 264 46.6
CSS0044063 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 1.2e-51 207.6 272 46.3
CSS0040852 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 1.5e-51 207.2 274 46.4
CANSAT64G1631 Cannabis sativa HOM05D007438 ORTHO05D009395 9.8e-51 204.5 304 43.4
Cc05_g09010 Coffea canephora HOM05D007438 ORTHO05D009395 9.8e-51 204.5 269 43.5
EL10Ac9g21031 Beta vulgaris HOM05D007438 ORTHO05D009395 2.8e-50 203.0 280 40.7
MELO3C014451.2 Cucumis melo HOM05D007438 ORTHO05D009395 6.3e-50 201.8 270 43.7
PGSC0003DMG401017288 Solanum tuberosum HOM05D007438 ORTHO05D009395 6.3e-50 201.8 265 43.8
Sed0004780 Sechium edule HOM05D007438 ORTHO05D009395 8.3e-50 201.4 272 42.6
Prupe.3G108500 Prunus persica HOM05D007438 ORTHO05D009395 1.4e-49 200.7 217 53.5
Sabra14G0106800 Salix brachista HOM05D007438 ORTHO05D009395 1.8e-49 200.3 261 47.1
Atru.chr6.3569 Acer truncatum HOM05D007438 ORTHO05D009395 2.4e-49 199.9 275 47.3
Peaxi162Scf00154g01024 Petunia axillaris HOM05D007438 ORTHO05D009395 9.2e-49 198.0 254 46.1
Aqoxy1G01934 Aquilegia oxysepala HOM05D007438 ORTHO05D009395 5.9e-48 195.3 283 41.3
CsaV3_6G037900 Cucumis sativus L. HOM05D007438 ORTHO05D009395 7.8e-48 194.9 270 43.7
Sopen07g029090 Solanum pennellii HOM05D007438 ORTHO05D009395 1.0e-47 194.5 266 44.0
Nn3g21054 Nelumbo nucifera HOM05D007438 ORTHO05D009395 1.7e-47 193.7 258 41.9
Rhsim04G0081300 Rhododendron simsii HOM05D007438 ORTHO05D009395 1.7e-47 193.7 274 45.3
A10p05120 Brassica napus HOM05D007438 ORTHO05D009395 8.6e-47 191.4 300 38.7
SalBow7G1752 Salvia bowleyana HOM05D007438 ORTHO05D009395 1.1e-46 191.0 265 43.4
Dinv11426 Davidia involucrata HOM05D007438 ORTHO05D009395 5.6e-46 188.7 264 45.5
AUR62031789 Chenopodium quinoa HOM05D007438 ORTHO05D009395 9.5e-46 188.0 279 38.7
Solyc07g055720.4 Solanum lycopersicum HOM05D007438 ORTHO05D009395 9.5e-46 188.0 266 43.6
TWI74G0447 Tripterygium wilfordii HOM05D007438 ORTHO05D009395 8.0e-45 184.9 264 46.2
BraA10t42777Z Brassica rapa HOM05D007438 ORTHO05D009395 2.3e-44 183.3 312 35.6
Sp1g05220 Schrenkiella parvula HOM05D007438 ORTHO05D009395 3.1e-44 183.0 303 38.0
Nitab4.5_0003133g0060 Nicotiana tabacum HOM05D007438 ORTHO05D009395 8.9e-44 181.4 264 41.3
AL1G16470 Arabidopsis lyrata HOM05D007438 ORTHO05D009395 1.5e-43 180.6 285 38.2
Migut.M00210 Erythranthe guttata HOM05D007438 ORTHO05D009395 2.0e-43 180.3 266 41.4
C05p04710 Brassica napus HOM05D007438 ORTHO05D009395 9.8e-43 177.9 300 35.0
BolC5t29243H Brassica oleracea HOM05D007438 ORTHO05D009395 1.7e-42 177.2 311 34.1
HanXRQChr01g0028661 Helianthus annuus HOM05D007438 ORTHO05D009395 1.7e-42 177.2 278 40.6
Hund07732 Selenicereus undatus HOM05D007438 ORTHO05D009395 1.7e-42 177.2 290 37.6
Carub.0001s0582 Capsella rubella HOM05D007438 ORTHO05D009395 2.2e-42 176.8 310 36.1
DCAR_013288 Daucus carota HOM05D007438 ORTHO05D009395 2.2e-42 176.8 254 42.5
CARHR006070 Cardamine hirsuta HOM05D007438 ORTHO05D009395 1.1e-41 174.5 283 36.7
Lj3C1012T3 Lonicera japonica HOM05D007438 ORTHO05D009395 1.9e-41 173.7 267 39.7
SEGI_11984 Sequoiadendron giganteum HOM05D007438 ORTHO05D009395 1.2e-40 171.0 273 38.8
AT1G06460 Arabidopsis thaliana HOM05D007438 ORTHO05D009395 1.6e-40 170.6 286 37.4
ECA234G1517 Erigeron canadensis HOM05D007438 ORTHO05D009395 4.6e-40 169.1 272 41.5
Lsat_1_v5_gn_4_26780 Lactuca sativa HOM05D007438 ORTHO05D009395 4.6e-40 169.1 276 39.1
CSS0035465 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 7.8e-40 168.3 285 40.0
BcaB02g06796 Brassica carinata HOM05D007438 ORTHO05D009395 3.9e-39 166.0 300 35.7
BraA08t35504Z Brassica rapa HOM05D007438 ORTHO05D009395 3.9e-39 166.0 292 36.3
AUR62023994 Chenopodium quinoa HOM05D007438 ORTHO05D009395 3.9e-39 166.0 272 36.4
Aa31LG1G7510 Aethionema arabicum HOM05D007438 ORTHO05D009395 1.9e-38 163.7 310 37.4
arahy.Tifrunner.gnm1.ann1.28WURV Arachis hypogaea HOM05D007438 ORTHO05D009395 5.6e-38 162.2 210 47.6
THA.LOC104800831 Tarenaya hassleriana HOM05D007438 ORTHO05D009395 2.1e-37 160.2 254 38.2
TAR626G1821 Trochodendron aralioides HOM05D007438 ORTHO05D009395 6.2e-37 158.7 201 45.3
A08p35960 Brassica napus HOM05D007438 ORTHO05D009395 2.0e-35 153.7 250 36.8
C08p02600 Brassica napus HOM05D007438 ORTHO05D009395 4.4e-35 152.5 258 39.1
BolC8t47053H Brassica oleracea HOM05D007438 ORTHO05D009395 5.4e-33 145.6 267 37.8
ATR0127G021 Amborella trichopoda HOM05D007438 ORTHO05D009395 2.5e-30 136.7 222 37.8
Thhalv10008353m.g Eutrema salsugineum HOM05D007438 ORTHO05D009395 1.2e-29 134.4 238 36.1
SMO111G0151 Selaginella moellendorffii HOM05D007438 ORTHO05D009395 1.6e-29 134.0 268 33.6
HPP92_021771 Vanilla planifolia HOM05D007438 ORTHO05D009395 4.0e-28 129.4 259 36.7
Nitab4.5_0005259g0040 Nicotiana tabacum HOM05D007438 ORTHO05D009395 6.8e-28 128.6 225 38.2
Mapoly0109s0048 Marchantia polymorpha HOM05D007438 ORTHO05D009395 8.9e-28 128.3 305 34.8
Nitab4.5_0011473g0010 Nicotiana tabacum HOM05D007438 ORTHO05D009395 1.5e-27 127.5 190 38.9
BcaB03g13417 Brassica carinata HOM05D000181 ORTHO05D002783 3.4e-27 126.3 260 34.2
Sc21g0004330 Simmondsia chinensis HOM05D007438 ORTHO05D009395 3.4e-27 126.3 106 56.6
BcaC07g36810 Brassica carinata HOM05D000181 ORTHO05D002783 4.7e-21 105.9 205 38.0
Sc21g0004320 Simmondsia chinensis HOM05D007438 ORTHO05D009395 1.2e-16 91.3 151 40.4
Haze_13451 Corylus avellana HOM05D007438 ORTHO05D009395 5.1e-15 85.9 127 46.5
Lj2g0002550 Lotus japonicus HOM05D007438 ORTHO05D009395 8.7e-15 85.1 56 73.2
SalBow8G2019 Salvia bowleyana HOM05D007438 ORTHO05D009395 1.1e-12 78.2 158 37.3
HanXRQChr17g0565881 Helianthus annuus HOM05D007438 ORTHO05D009395 6.4e-10 68.9 141 33.3
Pp3c2_23860 Physcomitrium patens HOM05D007438 ORTHO05D009395 6.4e-10 68.9 220 29.5
PGR042G1027 Punica granatum HOM05D000136 ORTHO05D000080 2.3e-07 60.5 100 33.0
Os11g0244200 Oryza sativa ssp. japonica HOM05D000136 ORTHO05D000080 3.9e-07 59.7 101 35.6
MD07G1298000 Malus domestica HOM05D001099 ORTHO05D000958 5.1e-07 59.3 143 30.1
CDE02G4055 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 6.6e-07 58.9 100 32.0
FAN10G3023 Fragaria x ananassa HOM05D001099 ORTHO05D000958 8.7e-07 58.5 154 27.3
GSVIVG01023134001 Vitis vinifera HOM05D000136 ORTHO05D000080 8.7e-07 58.5 100 32.0
Zm00001eb112330 Zea mays HOM05D000136 ORTHO05D000080 8.7e-07 58.5 101 35.6
Gohir.A02G032800 Gossypium hirsutum HOM05D000136 ORTHO05D000080 1.1e-06 58.2 100 33.0
Gohir.D02G039500 Gossypium hirsutum HOM05D000136 ORTHO05D000080 1.1e-06 58.2 100 33.0
Gorai.005G043700 Gossypium raimondii HOM05D000136 ORTHO05D000080 1.1e-06 58.2 100 33.0
SEGI_10361 Sequoiadendron giganteum HOM05D000136 ORTHO05D000958 1.1e-06 58.2 103 31.1
Haze_09969 Corylus avellana HOM05D000136 ORTHO05D000080 1.5e-06 57.8 97 34.0
FvH4_7g32800 Fragaria vesca HOM05D001099 ORTHO05D000958 1.5e-06 57.8 154 27.3
FAN01G1585 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.5e-06 57.8 154 27.3
FAN03G0031 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.5e-06 57.8 154 27.3
FAN03G1450 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.5e-06 57.8 154 27.3
FAN10G3756 Fragaria x ananassa HOM05D001099 ORTHO05D000958 1.5e-06 57.8 154 27.3
HanXRQChr12g0355901 Helianthus annuus HOM05D000136 ORTHO05D000080 1.5e-06 57.8 100 34.0
Peaxi162Scf00797g00012 Petunia axillaris HOM05D001099 ORTHO05D000958 1.5e-06 57.8 114 31.6
AUR62035610 Chenopodium quinoa HOM05D001099 ORTHO05D000958 1.9e-06 57.4 141 29.1
Peaxi162Scf00011g00203 Petunia axillaris HOM05D000136 ORTHO05D000080 1.9e-06 57.4 100 32.0
Prupe.1G586200 Prunus persica HOM05D000136 ORTHO05D000080 1.9e-06 57.4 99 32.3
PGSC0003DMG400020718 Solanum tuberosum HOM05D000136 ORTHO05D000080 1.9e-06 57.4 100 31.0
Thecc.06G020500 Theobroma cacao HOM05D000136 ORTHO05D000080 1.9e-06 57.4 99 31.3
GSVIVG01038631001 Vitis vinifera HOM05D001099 ORTHO05D000958 1.9e-06 57.4 139 28.1
MSTRG.26985 Avicennia marina HOM05D001099 ORTHO05D000958 2.5e-06 57.0 141 28.4
Glyma.18G010500 Glycine max HOM05D001099 ORTHO05D000958 2.5e-06 57.0 129 29.5
Sopen01g045370 Solanum pennellii HOM05D000136 ORTHO05D000080 2.5e-06 57.0 100 31.0
SGA_v2.0_scaffold131G34438 Striga asiatica HOM05D000136 ORTHO05D000080 2.5e-06 57.0 107 32.7
EL10Ac6g13968 Beta vulgaris HOM05D000136 ORTHO05D000080 3.3e-06 56.6 100 31.0
CAN.G853.6 Capsicum annuum HOM05D000136 ORTHO05D000080 3.3e-06 56.6 100 32.0
Lsat_1_v5_gn_9_81920 Lactuca sativa HOM05D000136 ORTHO05D000080 3.3e-06 56.6 100 33.0
Lsat_1_v5_gn_9_82001 Lactuca sativa HOM05D000136 ORTHO05D000080 3.3e-06 56.6 100 33.0
Manes.01G042200 Manihot esculenta HOM05D001099 ORTHO05D000958 3.3e-06 56.6 144 30.6
QL02p103630 Quercus lobata HOM05D000136 ORTHO05D000080 3.3e-06 56.6 99 32.3
CiPaw.03G011300 Carya illinoinensis HOM05D000136 ORTHO05D000080 4.3e-06 56.2 155 25.8
Cc02_g23670 Coffea canephora HOM05D000136 ORTHO05D000080 4.3e-06 56.2 100 29.0
Nitab4.5_0001318g0050 Nicotiana tabacum HOM05D001099 ORTHO05D000958 4.3e-06 56.2 120 30.8
Potri.010G053400 Populus trichocarpa HOM05D001099 ORTHO05D000958 4.3e-06 56.2 111 31.5
Solyc01g102960.3 Solanum lycopersicum HOM05D000136 ORTHO05D000080 4.3e-06 56.2 100 31.0
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 5.6e-06 55.8 96 29.2
Ciclev10016547m.g Citrus clementina HOM05D001099 ORTHO05D000958 7.3e-06 55.5 116 31.0
Psat5g093880 Pisum sativum HOM05D001099 ORTHO05D000958 7.3e-06 55.5 130 30.0
Prupe.2G317700 Prunus persica HOM05D001099 ORTHO05D000958 7.3e-06 55.5 143 30.1
RcHm_v2.0_Chr1g0382761 Rosa chinensis HOM05D001099 ORTHO05D000958 7.3e-06 55.5 143 27.3
Cfa004429 Carpinus fangiana HOM05D000136 ORTHO05D000080 9.6e-06 55.1 100 33.0
Ciclev10003244m.g Citrus clementina HOM05D000136 ORTHO05D000080 9.6e-06 55.1 100 27.0
Sopen03g032980 Solanum pennellii HOM05D000136 ORTHO05D000080 9.6e-06 55.1 100 32.0
TPR.G33393 Trifolium pratense HOM05D001099 ORTHO05D000958 9.6e-06 55.1 129 28.7


User provided reference genes

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