Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 4.7e-244 847.4 424 100.0
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 4.1e-184 648.3 422 78.9
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.9e-168 596.3 388 78.4
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 2.8e-140 502.7 427 64.4
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 8.2e-140 501.1 420 65.5
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 4.8e-132 475.3 420 64.0
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.7e-129 466.8 466 58.4
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.4e-128 463.8 477 57.7
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 3.7e-108 396.0 383 59.0
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 1.2e-103 380.9 430 52.3
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 4.0e-102 375.9 489 48.9
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 5.2e-102 375.6 428 51.4
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.5e-101 374.0 426 51.6
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 2.0e-101 373.6 462 49.8
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.7e-100 370.5 440 51.4
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 2.2e-100 370.2 441 51.7
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 4.9e-100 369.0 462 48.9
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 7.0e-99 365.2 402 51.5
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 7.0e-99 365.2 379 57.5
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 9.2e-99 364.8 426 49.8
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 7.8e-98 361.7 477 46.5
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 5.0e-97 359.0 442 49.5
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 5.6e-96 355.5 436 50.2
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 1.6e-95 354.0 427 51.8
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 8.0e-95 351.7 437 50.6
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 5.2e-94 349.0 381 53.3
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 2.6e-93 346.7 429 49.2
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 6.4e-92 342.0 426 50.2
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 8.3e-92 341.7 240 75.0
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.9e-91 340.5 426 49.5
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 2.7e-90 336.7 382 49.7
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 3.0e-89 333.2 445 45.8
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 3.0e-89 333.2 426 47.4
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 7.3e-88 328.6 473 43.8
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 1.2e-87 327.8 438 46.8
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 2.8e-87 326.6 472 44.7
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 2.8e-87 326.6 404 48.0
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 3.6e-87 326.2 417 47.7
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 6.2e-87 325.5 376 48.9
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.1e-86 324.7 421 48.9
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 1.4e-86 324.3 376 47.9
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 1.4e-86 324.3 529 40.6
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 2.3e-86 323.6 394 48.5
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 4.4e-85 319.3 404 48.8
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 5.8e-85 318.9 384 49.5
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 2.9e-84 316.6 374 48.9
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 3.7e-84 316.2 401 46.1
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 1.1e-83 314.7 389 50.1
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 4.1e-83 312.8 382 49.0
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 5.4e-83 312.4 397 47.6
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 9.2e-83 311.6 386 47.9
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 1.2e-82 311.2 385 48.1
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.7e-82 310.1 401 47.9
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 2.7e-82 310.1 430 44.7
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 1.0e-81 308.1 387 47.5
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 3.9e-81 306.2 401 46.1
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 5.1e-81 305.8 384 48.2
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 1.1e-80 304.7 384 45.6
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.1e-78 298.1 382 48.7
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 1.4e-78 297.7 389 45.0
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 1.7e-76 290.8 424 44.8
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 2.2e-76 290.4 397 43.8
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.1e-75 288.1 397 45.1
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 1.4e-75 287.7 403 45.9
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 4.1e-75 286.2 396 45.2
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.2e-74 284.6 366 48.6
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 4.6e-74 282.7 391 44.2
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 1.7e-73 280.8 411 44.0
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.1e-73 279.3 370 44.9
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 6.6e-73 278.9 400 42.5
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 8.6e-73 278.5 407 45.9
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 1.1e-72 278.1 385 45.2
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.5e-72 277.7 385 45.7
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 3.3e-72 276.6 409 43.5
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.6e-71 274.2 409 42.5
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.6e-71 274.2 409 42.5
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 2.8e-71 273.5 376 46.0
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 4.4e-69 266.2 444 39.6
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 4.4e-69 266.2 394 42.9
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 3.8e-68 263.1 419 40.6
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.9e-67 260.8 197 68.5
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.6e-66 257.7 383 43.1
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.1e-66 257.3 383 43.6
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 3.5e-66 256.5 383 43.1
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.0e-65 255.0 389 41.1
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 1.3e-65 254.6 383 43.3
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 8.7e-65 251.9 383 44.1
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 2.5e-64 250.4 292 52.7
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 3.3e-64 250.0 375 41.6
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.6e-64 249.2 387 42.1
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.6e-64 249.2 354 43.2
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.8e-62 244.2 394 38.8
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 5.4e-59 232.6 491 35.6
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.0e-57 228.4 590 32.4
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.9e-57 226.5 320 44.1
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.1e-56 224.9 330 42.1
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.3e-56 222.2 367 41.1
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 7.3e-56 222.2 197 61.4
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 2.9e-52 210.3 491 33.2
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.6e-50 204.5 225 53.3
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 2.7e-50 203.8 250 48.4
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.5e-48 197.2 243 46.9
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 2.8e-47 193.7 285 43.5
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.8e-46 191.0 269 47.6
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 6.0e-42 176.0 154 55.8
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 1.8e-41 174.5 326 34.0
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 3.3e-40 170.2 156 57.1
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 1.5e-37 161.4 377 32.6
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 1.2e-34 151.8 196 47.4
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 6.7e-33 146.0 375 33.9
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 2.1e-26 124.4 111 60.4
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 1.4e-25 121.7 84 67.9
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 2.3e-25 120.9 293 33.1
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 2.3e-25 120.9 206 37.4
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.7e-23 114.8 122 51.6
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 6.3e-23 112.8 395 26.8
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 2.4e-22 110.9 369 27.6
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.6e-18 98.2 82 54.9
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 7.9e-18 95.9 148 39.2
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 1.1e-16 92.0 55 72.7
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.1e-10 71.2 63 58.7


User provided reference genes

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