Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 1.3e-73 280.0 188 100.0
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 4.3e-56 221.9 196 80.1
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 3.4e-37 159.1 151 74.8
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 4.0e-22 109.0 101 53.5
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 5.2e-22 108.6 88 58.0
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 7.1e-19 98.2 100 49.0
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 6.0e-18 95.1 101 48.5
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 5.1e-17 92.0 153 55.6
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 1.5e-16 90.5 95 44.2
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 4.3e-16 89.0 101 44.6
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 8.1e-15 84.7 101 42.6
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 6.9e-14 81.6 81 46.9
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 9.0e-14 81.3 99 43.4
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 1.2e-13 80.9 97 46.4
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.2e-13 80.9 101 41.6
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.5e-13 80.5 97 51.5
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 1.5e-13 80.5 97 51.5
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 3.4e-13 79.3 99 47.5
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 3.4e-13 79.3 96 51.0
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 4.5e-13 79.0 100 68.0
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 5.8e-13 78.6 100 40.0
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 5.8e-13 78.6 99 40.4
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 5.8e-13 78.6 101 41.6
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 9.9e-13 77.8 101 40.6
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 2.2e-12 76.6 101 40.6
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 2.9e-12 76.3 91 44.0
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 3.8e-12 75.9 95 44.2
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 4.9e-12 75.5 77 42.9
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 6.4e-12 75.1 95 44.2
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 2.4e-11 73.2 98 37.8
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 4.2e-11 72.4 94 42.6
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 5.4e-11 72.0 93 41.9
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 5.4e-11 72.0 193 54.9
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 5.4e-11 72.0 97 43.3
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 1.2e-10 70.9 99 42.4
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 2.7e-10 69.7 91 38.5
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 4.6e-10 68.9 52 55.8
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 4.6e-10 68.9 150 52.7
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 6.0e-10 68.6 93 39.8
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 6.0e-10 68.6 70 42.9
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 7.9e-10 68.2 66 48.5
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 1.0e-09 67.8 138 51.4
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.8e-09 67.0 99 41.4
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 2.3e-09 66.6 101 38.6
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 3.0e-09 66.2 122 52.5
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 5.1e-09 65.5 98 37.8
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 6.7e-09 65.1 94 39.4
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 8.7e-09 64.7 107 33.6
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 1.5e-08 63.9 107 35.5
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 1.5e-08 63.9 104 40.4
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 1.9e-08 63.5 86 39.5
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 1.9e-08 63.5 60 45.0
TPR.G1196 Trifolium pratense HOM05D008051 ORTHO05D009905 1.9e-08 63.5 93 41.9
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 3.3e-08 62.8 95 38.9
Nn1g07253 Nelumbo nucifera HOM05D008051 ORTHO05D009905 3.3e-08 62.8 93 39.8
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 5.6e-08 62.0 95 38.9
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 7.4e-08 61.6 102 38.2
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 7.4e-08 61.6 48 54.2
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 9.6e-08 61.2 97 38.1
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 9.6e-08 61.2 54 53.7
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 9.6e-08 61.2 101 38.6
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 1.3e-07 60.8 99 36.4
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 1.6e-07 60.5 71 39.4
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 2.1e-07 60.1 95 35.8
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 3.7e-07 59.3 95 38.9
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 6.2e-07 58.5 106 36.8
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 1.1e-06 57.8 92 35.9
TWI38G1116 Tripterygium wilfordii HOM05D002014 ORTHO05D001958 1.4e-06 57.4 113 29.2
Prupe.4G218600 Prunus persica HOM05D002014 ORTHO05D001958 2.4e-06 56.6 110 33.6
Medtr8g442580 Medicago truncatula HOM05D008051 ORTHO05D009905 3.1e-06 56.2 76 34.2
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 3.1e-06 56.2 91 35.2
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 4.0e-06 55.8 48 50.0
Prupe.4G218500 Prunus persica HOM05D002014 ORTHO05D001958 9.0e-06 54.7 111 33.3


User provided reference genes

Program Settings