Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G019100 Glycine max HOM05D004980 ORTHO05D006505 6.7e-99 364.0 183 100.0
Glyma.14G020732 Glycine max HOM05D004980 ORTHO05D006505 6.7e-99 364.0 183 100.0
Glyma.02G293600 Glycine max HOM05D004980 ORTHO05D006505 5.2e-91 337.8 183 92.9
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 5.4e-88 327.8 184 89.7
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 2.1e-84 315.8 183 86.3
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 1.8e-83 312.8 184 86.4
TPR.G4803 Trifolium pratense HOM05D004980 ORTHO05D006505 6.8e-83 310.8 183 84.2
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 5.7e-82 307.8 183 85.2
Medtr5g093580 Medicago truncatula HOM05D004980 ORTHO05D006505 5.7e-82 307.8 184 84.2
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 2.2e-81 305.8 184 82.6
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 2.4e-80 302.4 183 81.4
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 2.4e-80 302.4 183 82.0
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 3.1e-80 302.0 170 88.2
TAR626G1444 Trochodendron aralioides HOM05D004980 ORTHO05D006505 8.6e-78 293.9 183 78.1
Rhsim06G0222400 Rhododendron simsii HOM05D004980 ORTHO05D006505 2.1e-76 289.3 183 78.1
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 6.1e-76 287.7 183 75.4
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 4.0e-75 285.0 183 76.0
QL08p007075 Quercus lobata HOM05D004980 ORTHO05D006505 6.8e-75 284.3 182 78.0
CiPaw.12G132600 Carya illinoinensis HOM05D004980 ORTHO05D006505 1.5e-74 283.1 183 76.5
Cfa020293 Carpinus fangiana HOM05D004980 ORTHO05D006505 9.8e-74 280.4 183 77.0
Haze_09726 Corylus avellana HOM05D004980 ORTHO05D006505 1.7e-73 279.6 183 77.0
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 2.9e-73 278.9 183 76.5
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 6.4e-73 277.7 183 72.7
PSO541G1224 Papaver somniferum HOM05D004980 ORTHO05D006505 3.2e-72 275.4 183 73.2
GSVIVG01037705001 Vitis vinifera HOM05D004980 ORTHO05D006505 9.2e-72 273.9 183 72.7
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 1.6e-71 273.1 183 72.7
PSO675G8833 Papaver somniferum HOM05D004980 ORTHO05D006505 1.6e-71 273.1 183 72.7
ECA246G3869 Erigeron canadensis HOM05D004980 ORTHO05D006505 2.0e-71 272.7 183 72.1
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 2.0e-71 272.7 183 72.1
HanXRQChr05g0159781 Helianthus annuus HOM05D004980 ORTHO05D006505 2.7e-71 272.3 183 73.2
Ciclev10008197m.g Citrus clementina HOM05D004980 ORTHO05D006505 3.5e-71 271.9 183 72.1
Cc08_g05680 Coffea canephora HOM05D004980 ORTHO05D006505 1.0e-70 270.4 183 71.0
Nn3g21061 Nelumbo nucifera HOM05D004980 ORTHO05D006505 3.0e-70 268.9 183 72.1
Peaxi162Scf00235g00521 Petunia axillaris HOM05D004980 ORTHO05D006505 3.0e-70 268.9 183 71.6
Thecc.07G030400 Theobroma cacao HOM05D004980 ORTHO05D006505 1.1e-69 266.9 183 73.2
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 2.5e-69 265.8 183 71.6
Atru.chr2.3504 Acer truncatum HOM05D004980 ORTHO05D006505 3.3e-69 265.4 183 72.7
CAN.G337.68 Capsicum annuum HOM05D004980 ORTHO05D006505 3.3e-69 265.4 183 70.5
vmacro22325 Vaccinium macrocarpon HOM05D004980 ORTHO05D006505 3.3e-69 265.4 196 69.9
COL.COLO4_09708 Corchorus olitorius HOM05D004980 ORTHO05D006505 5.6e-69 264.6 183 71.0
Lju1319A3G37 Lonicera japonica HOM05D004980 ORTHO05D006505 5.6e-69 264.6 187 71.7
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 7.3e-69 264.2 183 68.3
Aqoxy1G02957 Aquilegia oxysepala HOM05D004980 ORTHO05D006505 4.7e-68 261.5 183 72.1
PGSC0003DMG400028768 Solanum tuberosum HOM05D004980 ORTHO05D006505 4.7e-68 261.5 183 69.9
FvH4_3g23360 Fragaria vesca HOM05D004980 ORTHO05D006505 6.2e-68 261.2 183 71.0
FAN11G2764 Fragaria x ananassa HOM05D004980 ORTHO05D006505 6.2e-68 261.2 183 71.0
FAN21G0499 Fragaria x ananassa HOM05D004980 ORTHO05D006505 6.2e-68 261.2 183 71.0
Lj1A365T17 Lonicera japonica HOM05D004980 ORTHO05D006505 6.2e-68 261.2 188 70.2
DCAR_016653 Daucus carota HOM05D004980 ORTHO05D006505 1.1e-67 260.4 183 69.4
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 1.4e-67 260.0 183 69.4
RcHm_v2.0_Chr5g0041141 Rosa chinensis HOM05D004980 ORTHO05D006505 2.3e-67 259.2 183 71.0
Sopen07g033050 Solanum pennellii HOM05D004980 ORTHO05D006505 2.3e-67 259.2 183 68.9
Duzib268G1663 Durio zibethinus HOM05D004980 ORTHO05D006505 3.1e-67 258.8 183 69.9
MSTRG.17982 Avicennia marina HOM05D004980 ORTHO05D006505 4.0e-67 258.5 183 69.4
FAN25G0097 Fragaria x ananassa HOM05D004980 ORTHO05D006505 5.2e-67 258.1 183 69.9
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 5.2e-67 258.1 183 69.9
Oeu057850.1 Olea europaea HOM05D004980 ORTHO05D006505 5.2e-67 258.1 183 68.3
PGSC0003DMG400022209 Solanum tuberosum HOM05D004980 ORTHO05D006505 5.2e-67 258.1 183 69.4
Solyc07g064850.3 Solanum lycopersicum HOM05D004980 ORTHO05D006505 6.8e-67 257.7 183 68.3
Migut.N00646 Erythranthe guttata HOM05D004980 ORTHO05D006505 8.9e-67 257.3 183 71.6
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 8.9e-67 257.3 183 70.5
TWI38G2207 Tripterygium wilfordii HOM05D004980 ORTHO05D006505 8.9e-67 257.3 183 69.9
PGR083G1712 Punica granatum HOM05D004980 ORTHO05D006505 1.2e-66 256.9 183 69.9
CANSAT11G1616 Cannabis sativa HOM05D004980 ORTHO05D006505 2.0e-66 256.1 183 71.6
EL10Ac4g07745 Beta vulgaris HOM05D004980 ORTHO05D006505 5.8e-66 254.6 183 68.9
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 9.8e-66 253.8 183 69.4
Gohir.1Z049437 Gossypium hirsutum HOM05D004980 ORTHO05D006505 2.2e-65 252.7 183 69.4
Gohir.A01G052750 Gossypium hirsutum HOM05D004980 ORTHO05D006505 2.2e-65 252.7 183 69.4
Ah.06g182490 Amaranthus hybridus HOM05D004980 ORTHO05D006505 4.9e-65 251.5 183 67.8
Lsat_1_v5_gn_5_3221 Lactuca sativa HOM05D004980 ORTHO05D006505 1.4e-64 250.0 183 67.2
Gohir.D05G373600 Gossypium hirsutum HOM05D004980 ORTHO05D006505 1.9e-64 249.6 183 69.4
AUR62015838 Chenopodium quinoa HOM05D004980 ORTHO05D006505 7.0e-64 247.7 183 67.2
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 7.0e-64 247.7 184 69.6
Gorai.009G442300 Gossypium raimondii HOM05D004980 ORTHO05D006505 1.2e-63 246.9 183 68.9
ClCG10G005220 Citrullus lanatus HOM05D004980 ORTHO05D006505 3.5e-63 245.4 184 67.4
MBI03_g18682_MAGBIO Magnolia biondii HOM05D004980 ORTHO05D006505 3.5e-63 245.4 176 69.9
AUR62020381 Chenopodium quinoa HOM05D004980 ORTHO05D006505 6.0e-63 244.6 183 66.1
Hund23210 Selenicereus undatus HOM05D004980 ORTHO05D006505 1.7e-62 243.0 183 67.8
Sc16g0005820 Simmondsia chinensis HOM05D004980 ORTHO05D006505 1.7e-62 243.0 183 67.2
THA.LOC104817676 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 3.0e-62 242.3 183 65.6
BcaB08g35877 Brassica carinata HOM05D004980 ORTHO05D006505 5.0e-62 241.5 184 67.9
Sed0018379 Sechium edule HOM05D004980 ORTHO05D006505 8.6e-62 240.7 184 65.2
SGA_v2.0_scaffold95G28711 Striga asiatica HOM05D004980 ORTHO05D006505 1.5e-61 240.0 185 65.4
Carub.0008s1543 Capsella rubella HOM05D004980 ORTHO05D006505 3.3e-61 238.8 186 66.1
Thhalv10013463m.g Eutrema salsugineum HOM05D004980 ORTHO05D006505 3.3e-61 238.8 184 66.8
SalBow3G0070 Salvia bowleyana HOM05D004980 ORTHO05D006505 4.3e-61 238.4 185 63.2
A10p12400 Brassica napus HOM05D004980 ORTHO05D006505 5.6e-61 238.0 184 65.8
C09p45860 Brassica napus HOM05D004980 ORTHO05D006505 5.6e-61 238.0 185 67.0
SGA_v2.0_scaffold77G25279 Striga asiatica HOM05D004980 ORTHO05D006505 5.6e-61 238.0 208 60.6
BraA02t06050Z Brassica rapa HOM05D004980 ORTHO05D006505 9.5e-61 237.3 184 65.8
BraA10t43335Z Brassica rapa HOM05D004980 ORTHO05D006505 9.5e-61 237.3 184 65.8
Sp6g17070 Schrenkiella parvula HOM05D004980 ORTHO05D006505 9.5e-61 237.3 184 66.8
Sed0026676 Sechium edule HOM05D004980 ORTHO05D006505 9.5e-61 237.3 184 64.7
BolC9t57438H Brassica oleracea HOM05D004980 ORTHO05D006505 2.1e-60 236.1 185 67.0
THA.LOC104813432 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 2.8e-60 235.7 184 66.3
Actinidia05071 Actinidia chinensis HOM05D004980 ORTHO05D006505 3.6e-60 235.3 156 73.1
ATR1128G016 Amborella trichopoda HOM05D004980 ORTHO05D006505 4.7e-60 235.0 185 66.5
BcaC04g20267 Brassica carinata HOM05D004980 ORTHO05D006505 6.2e-60 234.6 185 66.5
CsaV3_3G004900 Cucumis sativus L. HOM05D004980 ORTHO05D006505 8.1e-60 234.2 183 64.5
unitig_61.g26342 Utricularia gibba HOM05D004980 ORTHO05D006505 8.1e-60 234.2 183 64.5
BolC2t07741H Brassica oleracea HOM05D004980 ORTHO05D006505 1.4e-59 233.4 184 63.6
C02p16390 Brassica napus HOM05D004980 ORTHO05D006505 4.0e-59 231.9 185 64.3
AL8G30640 Arabidopsis lyrata HOM05D004980 ORTHO05D006505 6.8e-59 231.1 184 64.7
BcaC03g14262 Brassica carinata HOM05D004980 ORTHO05D006505 6.8e-59 231.1 183 62.8
CARHR268470 Cardamine hirsuta HOM05D004980 ORTHO05D006505 8.9e-59 230.7 186 65.1
AT5G55130 Arabidopsis thaliana HOM05D004980 ORTHO05D006505 1.2e-58 230.3 184 64.1
MELO3C014186.2 Cucumis melo HOM05D004980 ORTHO05D006505 2.0e-58 229.6 187 62.6
A02p09860 Brassica napus HOM05D004980 ORTHO05D006505 9.9e-58 227.3 206 60.2
CSS0031886 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 9.9e-58 227.3 183 63.9
Aa31LG3G11110 Aethionema arabicum HOM05D004980 ORTHO05D006505 3.7e-57 225.3 184 62.5
SHI26580 Sapria himalayana HOM05D004980 ORTHO05D006505 1.4e-56 223.4 184 63.6
HPP92_015323 Vanilla planifolia HOM05D004980 ORTHO05D006505 6.2e-52 208.0 185 58.9
HPP92_015364 Vanilla planifolia HOM05D004980 ORTHO05D006505 6.2e-52 208.0 185 58.9
Actinidia32274 Actinidia chinensis HOM05D004980 ORTHO05D006505 2.6e-50 202.6 132 75.8
Zm00001eb375420 Zea mays HOM05D004980 ORTHO05D006505 2.4e-48 196.1 185 53.0
Zm00001eb188720 Zea mays HOM05D004980 ORTHO05D006505 7.1e-48 194.5 184 52.2
SEGI_15101 Sequoiadendron giganteum HOM05D004980 ORTHO05D006505 1.2e-42 177.2 199 48.2
Os02g0804600 Oryza sativa ssp. japonica HOM05D004980 ORTHO05D006505 3.8e-41 172.2 185 49.2
Mapoly0013s0163 Marchantia polymorpha HOM05D004980 ORTHO05D006505 8.4e-41 171.0 207 46.9
CDE06G0656 Ceratophyllum demersum HOM05D004980 ORTHO05D006505 2.1e-39 166.4 168 51.2
CAN.G631.2 Capsicum annuum HOM05D004980 ORTHO05D043407 7.3e-37 157.9 130 58.5
Pp3c19_6530 Physcomitrium patens HOM05D004980 ORTHO05D006505 6.9e-35 151.4 182 45.6
Zm00001eb074840 Zea mays HOM05D004980 ORTHO05D006505 4.5e-34 148.7 184 44.6
SMO235G0013 Selaginella moellendorffii HOM05D004980 ORTHO05D006505 2.5e-29 132.9 183 38.8
SMO347G0194 Selaginella moellendorffii HOM05D004980 ORTHO05D006505 1.6e-28 130.2 183 37.2
AagrBONN_evm.TU.Sc2ySwM_368.2510 Anthoceros agrestis HOM05D004980 ORTHO05D006505 2.1e-28 129.8 189 40.2
Actinidia14067 Actinidia chinensis HOM05D004980 ORTHO05D006505 1.8e-27 126.7 176 44.3
CAN.G1099.1 Capsicum annuum HOM05D004980 ORTHO05D006505 2.2e-25 119.8 138 47.8
CBR_g19046 Chara braunii HOM05D004980 ORTHO05D006505 1.9e-24 116.7 204 34.3
Hma1.2p1_1332F.1_g276080 Hydrangea macrophylla HOM05D004980 ORTHO05D006505 4.6e-23 112.1 188 39.9
PRCOL_00001455 Prasinoderma coloniale HOM05D004980 ORTHO05D006505 1.6e-20 103.6 190 36.3
Actinidia02889 Actinidia chinensis HOM05D004980 ORTHO05D006505 5.3e-19 98.6 61 78.7
Psat6g174400 Pisum sativum HOM05D004980 ORTHO05D322940 9.0e-19 97.8 65 73.8
Cfa026714 Carpinus fangiana HOM05D004980 ORTHO05D006505 3.0e-14 82.8 189 31.7
MCO02G238 Micromonas commoda HOM05D004980 ORTHO05D006505 3.0e-14 82.8 183 33.3
CAN.G699.10 Capsicum annuum HOM05D004980 ORTHO05D043407 3.9e-14 82.4 68 58.8
CDE02G3733 Ceratophyllum demersum HOM05D004980 ORTHO05D006505 8.7e-14 81.3 64 60.9
SEGI_30719 Sequoiadendron giganteum HOM05D004980 ORTHO05D384019 2.5e-08 63.2 99 39.4
Cre09.g402034 Chlamydomonas reinhardtii HOM05D004980 ORTHO05D006505 1.6e-07 60.5 147 29.3
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 4.6e-07 58.9 101 31.7
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 7.9e-07 58.2 101 31.7
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 1.4e-06 57.4 101 31.7
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 8.8e-06 54.7 101 31.7


User provided reference genes

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