Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 3.6e-68 261.5 140 100.0
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 1.7e-25 119.8 73 84.9
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 1.9e-24 116.3 76 77.6
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 5.1e-22 108.2 73 74.0
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 7.4e-21 104.4 70 72.9
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 2.1e-20 102.8 70 71.4
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 1.2e-18 97.1 74 68.9
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 1.9e-16 89.7 71 67.6
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 7.1e-16 87.8 94 57.4
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 2.7e-15 85.9 69 63.8
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 1.1e-13 80.5 50 76.0
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 3.7e-12 75.5 54 70.4
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 3.7e-12 75.5 53 73.6
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 4.8e-12 75.1 73 54.8
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 4.8e-12 75.1 58 65.5
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 4.8e-12 75.1 77 55.8
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 8.2e-12 74.3 75 53.3
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 1.1e-11 73.9 73 58.9
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 1.1e-11 73.9 75 53.3
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 1.1e-11 73.9 49 71.4
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 1.4e-11 73.6 85 50.6
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 1.4e-11 73.6 77 55.8
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.8e-11 73.2 75 58.7
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 1.8e-11 73.2 50 74.0
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 2.4e-11 72.8 49 77.6
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 2.4e-11 72.8 75 57.3
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 2.4e-11 72.8 65 60.0
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 2.4e-11 72.8 74 56.8
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 4.1e-11 72.0 91 49.5
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 4.1e-11 72.0 54 68.5
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 4.1e-11 72.0 58 62.1
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 5.3e-11 71.6 50 72.0
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 5.3e-11 71.6 76 52.6
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 5.3e-11 71.6 68 57.4
TPR.G22173 Trifolium pratense HOM05D007375 ORTHO05D009293 5.3e-11 71.6 59 71.2
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 6.9e-11 71.2 87 49.4
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 6.9e-11 71.2 75 56.0
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 6.9e-11 71.2 75 56.0
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 6.9e-11 71.2 50 74.0
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 6.9e-11 71.2 50 70.0
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 6.9e-11 71.2 50 70.0
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 6.9e-11 71.2 56 64.3
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 9.0e-11 70.9 88 51.1
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 9.0e-11 70.9 67 55.2
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 9.0e-11 70.9 75 56.0
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 9.0e-11 70.9 65 58.5
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 9.0e-11 70.9 65 58.5
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 1.5e-10 70.1 50 70.0
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 1.5e-10 70.1 52 67.3
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 1.5e-10 70.1 54 64.8
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 2.0e-10 69.7 70 52.9
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 2.0e-10 69.7 70 52.9
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 2.0e-10 69.7 70 52.9
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 2.0e-10 69.7 70 52.9
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 2.0e-10 69.7 52 65.4
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 3.4e-10 68.9 68 55.9
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 3.4e-10 68.9 68 55.9
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 3.4e-10 68.9 71 52.1
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 3.4e-10 68.9 36 86.1
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 4.5e-10 68.6 54 63.0
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 4.5e-10 68.6 54 63.0
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 4.5e-10 68.6 52 65.4
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 5.9e-10 68.2 48 68.8
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 7.6e-10 67.8 52 67.3
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 7.6e-10 67.8 52 67.3
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 1.0e-09 67.4 90 47.8
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 1.0e-09 67.4 84 44.0
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 1.3e-09 67.0 36 83.3
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 1.7e-09 66.6 55 61.8
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 2.2e-09 66.2 70 51.4
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 2.2e-09 66.2 54 63.0
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 2.9e-09 65.9 73 47.9
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 3.8e-09 65.5 55 61.8
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 3.8e-09 65.5 50 66.0
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 3.8e-09 65.5 45 71.1
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 5.0e-09 65.1 70 50.0
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 5.0e-09 65.1 53 62.3
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 5.0e-09 65.1 65 53.8
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 5.0e-09 65.1 53 62.3
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 6.5e-09 64.7 37 75.7
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 6.5e-09 64.7 36 80.6
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 8.5e-09 64.3 36 75.0
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 8.5e-09 64.3 53 62.3
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 1.1e-08 63.9 53 62.3
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 5.5e-08 61.6 45 62.2
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 1.2e-07 60.5 103 44.7
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 2.7e-07 59.3 34 79.4
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 2.7e-07 59.3 107 43.9
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 1.0e-06 57.4 100 41.0
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 5.1e-06 55.1 34 73.5


User provided reference genes

Program Settings