Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 2.7e-163 578.6 283 100.0
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 7.4e-137 490.7 246 98.0
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 9.1e-127 457.2 246 91.1
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 1.8e-122 443.0 244 86.9
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.1e-121 440.3 245 86.5
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 1.1e-121 440.3 245 87.8
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.3e-120 436.8 244 84.8
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 4.8e-120 434.9 245 84.9
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 2.6e-118 429.1 248 81.9
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 3.8e-117 425.2 244 83.2
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 2.1e-115 419.5 244 83.2
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.3e-112 410.2 245 79.6
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.8e-112 409.1 244 82.4
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 7.7e-110 401.0 245 78.0
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 3.0e-106 389.0 245 74.3
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 4.0e-106 388.7 244 75.8
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 7.5e-105 384.4 252 71.0
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.3e-104 383.6 245 73.9
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 6.3e-104 381.3 245 75.1
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 6.3e-104 381.3 245 74.3
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 8.2e-104 380.9 245 73.9
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 8.2e-104 380.9 255 72.2
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.1e-103 380.6 245 73.5
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.1e-103 380.6 243 72.4
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 2.4e-103 379.4 252 71.0
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.4e-103 379.4 245 73.9
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 5.3e-103 378.3 245 74.7
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 1.6e-102 376.7 244 73.8
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 2.0e-102 376.3 245 73.5
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 2.7e-102 375.9 245 72.7
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 4.5e-102 375.2 245 71.8
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 5.9e-102 374.8 245 70.6
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 3.8e-101 372.1 245 73.1
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 8.5e-101 370.9 245 73.1
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 8.0e-99 364.4 244 71.7
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 4.0e-98 362.1 290 62.4
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 5.2e-98 361.7 245 69.4
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.2e-97 360.5 245 69.4
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 1.5e-97 360.1 245 69.8
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 4.4e-97 358.6 195 87.7
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 5.7e-97 358.2 246 68.7
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.7e-96 356.7 196 85.2
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 3.7e-96 355.5 243 70.4
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 3.7e-96 355.5 245 68.2
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 6.3e-96 354.8 245 68.6
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.4e-95 353.6 242 69.0
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 1.8e-95 353.2 245 69.0
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 3.1e-95 352.4 239 68.6
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 9.1e-95 350.9 243 70.0
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 9.1e-95 350.9 242 69.0
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 1.6e-94 350.1 245 70.6
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.0e-94 349.7 245 66.9
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 2.0e-94 349.7 243 69.1
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.7e-93 346.7 246 65.9
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 2.3e-93 346.3 267 62.9
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 1.1e-92 344.0 243 70.0
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.1e-92 344.0 246 68.7
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.5e-92 343.6 245 68.6
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 1.9e-92 343.2 245 69.0
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.9e-92 343.2 245 69.8
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 3.3e-92 342.4 245 69.8
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 3.3e-92 342.4 245 66.9
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 4.2e-92 342.0 246 67.9
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 5.5e-92 341.7 243 66.7
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 5.5e-92 341.7 245 65.7
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 5.5e-92 341.7 242 65.7
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 9.5e-92 340.9 238 66.0
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 1.2e-91 340.5 243 66.7
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 2.1e-91 339.7 243 67.9
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 2.1e-91 339.7 243 68.3
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 6.1e-91 338.2 243 67.9
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 6.1e-91 338.2 244 68.4
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 1.0e-90 337.4 243 68.7
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.8e-90 336.7 244 67.6
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 2.3e-90 336.3 243 67.9
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 3.0e-90 335.9 243 67.5
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 3.0e-90 335.9 243 67.5
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 4.0e-90 335.5 243 65.8
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.5e-89 333.6 242 66.9
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.5e-89 333.6 242 66.9
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 3.4e-89 332.4 202 78.2
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.4e-87 327.0 248 64.9
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 3.1e-87 325.9 228 70.2
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 9.2e-87 324.3 244 61.9
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 1.6e-86 323.6 201 76.6
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 2.0e-86 323.2 216 69.0
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.3e-85 320.5 201 76.6
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 6.6e-85 318.2 243 65.0
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.5e-81 307.0 216 68.1
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 3.4e-81 305.8 246 63.0
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 6.4e-80 301.6 257 59.9
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 1.2e-78 297.4 216 67.1
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 2.0e-78 296.6 216 66.7
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 2.0e-78 296.6 281 56.2
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 1.0e-77 294.3 145 100.0
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 1.3e-77 293.9 217 67.7
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 1.3e-77 293.9 217 67.7
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.3e-77 293.9 192 70.3
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 3.0e-77 292.7 177 78.5
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 5.0e-77 292.0 217 67.7
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 1.9e-76 290.0 217 67.3
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.2e-75 287.3 245 59.2
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 8.0e-75 284.6 203 66.5
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 5.2e-74 282.0 245 56.7
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.4e-73 279.3 246 54.9
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 5.8e-73 278.5 232 61.6
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.1e-71 274.2 246 53.7
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.9e-71 273.5 246 54.5
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.6e-70 268.9 246 52.8
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 1.5e-68 263.8 196 64.8
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 3.3e-68 262.7 204 59.3
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 4.3e-68 262.3 245 55.9
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 9.5e-68 261.2 167 73.1
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 3.1e-66 256.1 243 61.7
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.2e-65 254.2 212 61.8
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.0e-65 253.4 200 58.0
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.3e-64 248.1 244 49.6
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.4e-63 247.3 242 53.3
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.2e-62 244.2 164 70.1
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 3.0e-61 239.6 195 62.1
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 5.6e-60 235.3 246 52.0
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.3e-60 235.0 228 51.3
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 5.2e-58 228.8 197 60.9
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-57 227.6 213 53.1
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.4e-55 219.9 214 49.1
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 5.1e-53 212.2 166 63.9
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 3.3e-52 209.5 227 51.5
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.6e-51 207.2 172 61.0
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.1e-51 204.9 194 52.1
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.2e-49 201.1 137 70.1
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 2.9e-48 196.4 197 51.8
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.6e-46 190.7 195 52.8
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 2.1e-46 190.3 242 45.9
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.1e-44 184.5 105 88.6
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 3.3e-44 183.0 108 82.4
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.7e-40 170.6 219 41.6
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.9e-39 167.2 105 72.4
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 7.1e-39 165.2 105 71.4
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 1.3e-35 154.5 105 67.6
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 1.2e-33 147.9 103 66.0
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 5.8e-33 145.6 225 42.7
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.3e-32 144.4 158 51.9
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 4.5e-25 119.4 163 40.5
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 3.2e-23 113.2 99 56.6
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.4e-18 97.8 66 69.7
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 5.0e-16 89.4 72 56.9
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 1.9e-15 87.4 65 60.0
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 5.7e-12 75.9 72 51.4
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-12 75.5 81 45.7
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 6.3e-11 72.4 215 27.0
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.8e-10 70.9 61 54.1
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.2e-08 63.9 82 39.0


User provided reference genes

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