Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 6.0e-183 644.0 323 100.0
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.9e-160 569.3 332 88.9
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 6.0e-151 537.7 331 83.7
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.3e-148 530.0 332 82.5
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.2e-146 523.5 336 79.8
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.3e-132 476.9 323 76.5
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 6.3e-132 474.6 271 84.9
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.4e-131 472.6 271 84.5
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 2.4e-131 472.6 323 71.5
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 1.1e-128 463.8 323 72.1
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 5.7e-125 451.4 291 78.7
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 6.3e-124 448.0 299 75.6
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.7e-121 439.9 323 68.7
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 3.1e-115 419.1 309 67.3
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 4.2e-112 408.7 277 69.7
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 7.9e-111 404.4 272 70.2
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 3.0e-110 402.5 321 64.8
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 4.8e-108 395.2 312 64.1
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 4.8e-108 395.2 265 68.7
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 5.3e-107 391.7 312 61.5
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 4.5e-106 388.7 278 68.0
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.0e-105 387.5 320 59.7
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.0e-105 387.5 289 63.7
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.2e-105 386.3 296 64.9
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 1.9e-104 383.3 268 67.9
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 7.2e-104 381.3 313 61.3
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 9.4e-104 380.9 283 64.3
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.6e-103 380.2 310 62.9
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.1e-103 379.8 303 61.4
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.6e-103 379.0 318 62.6
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 3.0e-102 375.9 321 59.2
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 2.0e-101 373.2 316 61.1
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 5.7e-101 371.7 307 62.2
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.2e-100 367.9 324 60.8
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.2e-100 367.9 324 60.8
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 3.1e-99 365.9 308 62.0
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 9.1e-99 364.4 316 58.2
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 9.1e-99 364.4 319 57.1
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.7e-98 362.8 313 61.0
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 3.5e-98 362.5 271 65.7
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 4.5e-98 362.1 265 65.7
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.9e-98 361.7 299 60.9
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.2e-97 359.8 308 61.4
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 6.5e-97 358.2 272 62.1
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.1e-96 357.5 299 60.2
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 1.1e-96 357.5 318 59.7
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 2.1e-95 353.2 273 62.6
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 4.7e-95 352.1 275 62.9
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.0e-94 350.9 295 62.0
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.5e-93 347.1 204 80.4
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.5e-93 347.1 291 60.1
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 2.0e-93 346.7 282 61.7
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 2.6e-93 346.3 315 57.1
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 9.8e-93 344.4 266 62.8
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.3e-92 344.0 275 61.1
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.2e-92 343.2 315 56.5
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.7e-92 342.4 329 58.1
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 6.3e-92 341.7 314 58.6
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.4e-91 339.7 306 55.2
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 9.1e-91 337.8 264 60.6
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 2.0e-90 336.7 271 61.3
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 5.9e-90 335.1 271 60.9
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 7.7e-90 334.7 272 59.9
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.3e-89 334.0 280 57.1
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 5.0e-89 332.0 268 61.6
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.9e-88 330.1 327 55.0
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 2.5e-88 329.7 268 58.6
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 3.2e-88 329.3 266 58.3
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 7.2e-88 328.2 293 54.9
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 3.6e-87 325.9 298 57.4
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 4.7e-87 325.5 322 50.9
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.8e-86 323.6 306 54.2
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 2.3e-86 323.2 287 54.0
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 3.0e-86 322.8 324 52.8
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 8.9e-86 321.2 306 52.0
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.2e-85 320.9 323 52.6
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 2.6e-85 319.7 306 54.2
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 7.5e-85 318.2 267 55.8
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 7.5e-85 318.2 276 57.2
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 9.8e-85 317.8 324 51.9
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 9.8e-85 317.8 315 52.7
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 2.8e-84 316.2 326 51.8
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 3.7e-84 315.8 302 53.6
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 6.3e-84 315.1 324 51.5
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 3.1e-83 312.8 313 51.4
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.2e-82 310.8 309 51.1
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.6e-82 310.5 284 53.2
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 2.7e-82 309.7 289 54.7
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 2.7e-82 309.7 314 52.2
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 4.5e-82 308.9 314 51.0
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 5.9e-82 308.5 326 50.3
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 2.3e-81 306.6 314 51.0
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.3e-81 306.6 309 50.8
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 2.9e-81 306.2 312 52.2
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 7.3e-80 301.6 311 51.4
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.8e-79 299.7 311 50.8
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 4.0e-78 295.8 358 46.1
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 6.8e-78 295.0 309 50.8
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 9.8e-77 291.2 307 50.2
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.9e-76 289.7 270 54.4
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.8e-75 287.0 310 49.7
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 2.7e-74 283.1 260 57.3
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 4.6e-74 282.3 320 50.6
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.6e-74 282.3 203 68.0
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.6e-74 282.3 203 68.0
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 7.8e-74 281.6 267 50.9
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 3.0e-73 279.6 294 48.3
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 8.6e-73 278.1 267 50.6
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.6e-71 272.7 267 53.2
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 3.1e-70 269.6 198 67.7
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.0e-69 266.9 267 49.1
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.0e-69 266.9 315 46.3
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 5.8e-69 265.4 303 44.6
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.5e-69 265.0 318 45.9
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.7e-68 263.8 286 45.5
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 6.4e-68 261.9 269 48.7
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 4.1e-67 259.2 307 43.6
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.5e-64 250.0 267 46.8
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 3.6e-63 246.1 328 45.1
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 6.2e-63 245.4 250 49.2
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.9e-60 236.5 307 42.3
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.9e-60 235.7 238 49.2
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 2.8e-55 219.9 220 51.8
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 5.2e-54 215.7 311 40.8
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.2e-53 214.5 242 43.8
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.0e-53 213.8 262 43.1
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 4.9e-52 209.1 178 55.6
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.4e-51 207.6 172 58.1
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.5e-50 203.0 273 41.0
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.1e-47 193.7 282 37.9
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.6e-45 186.8 287 39.0
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 5.8e-45 185.7 262 40.5
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.3e-44 184.5 276 37.7
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 4.9e-44 182.6 261 36.0
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.2e-43 179.5 283 36.0
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.6e-42 177.6 262 36.6
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 3.9e-33 146.4 96 71.9
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 9.6e-32 141.7 98 72.4
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.1e-30 138.3 206 38.3
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.3e-24 116.3 128 45.3
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 2.1e-23 114.0 90 58.9
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 3.4e-21 106.7 119 52.9
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.9e-20 102.8 203 32.0
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.3e-16 89.7 116 49.1
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.3e-16 89.7 116 49.1
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.3e-16 89.7 134 37.3
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 8.5e-12 75.5 193 30.6
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 5.5e-11 72.8 263 25.5
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.9e-09 66.6 170 28.8


User provided reference genes

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