Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.4e-113 412.9 205 100.0
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.6e-109 399.4 205 95.6
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 4.1e-105 384.8 205 91.2
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 6.6e-103 377.5 205 91.2
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 9.5e-102 373.6 205 87.8
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 6.2e-101 370.9 205 87.3
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 4.0e-100 368.2 205 85.4
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 6.4e-98 360.9 206 85.0
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 1.2e-96 356.7 205 83.9
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 3.5e-96 355.1 205 84.4
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 6.0e-96 354.4 203 83.7
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 6.0e-96 354.4 203 83.7
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.3e-95 353.2 205 84.9
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.1e-93 345.9 205 82.9
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 6.2e-85 317.8 205 72.2
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.1e-84 315.5 200 74.0
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 9.0e-84 313.9 200 73.0
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.0e-83 312.8 199 73.9
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.0e-83 312.8 200 73.5
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 3.4e-83 312.0 200 73.0
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 4.5e-83 311.6 200 73.0
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 7.6e-83 310.8 203 75.9
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 9.9e-83 310.5 205 72.7
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.3e-82 310.1 205 73.2
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.3e-82 310.1 201 72.1
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 2.2e-82 309.3 197 72.1
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 6.4e-82 307.8 205 70.7
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 8.4e-82 307.4 201 73.1
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 1.4e-81 306.6 207 72.0
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.9e-81 306.2 207 72.0
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 2.4e-81 305.8 200 71.5
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 3.2e-81 305.4 199 71.9
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 3.2e-81 305.4 200 73.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.2e-81 305.4 200 73.0
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 4.2e-81 305.1 200 73.0
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-80 303.5 207 70.5
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.2e-80 303.5 207 70.5
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.6e-80 303.1 207 69.6
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.6e-80 303.1 207 71.0
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.7e-80 302.4 200 72.5
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 3.5e-80 302.0 206 69.9
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 4.6e-80 301.6 207 69.6
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.6e-80 301.6 200 72.5
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 4.6e-80 301.6 201 70.6
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 6.0e-80 301.2 207 70.5
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 6.0e-80 301.2 206 68.9
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 6.0e-80 301.2 206 68.9
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 6.0e-80 301.2 202 72.8
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.0e-79 300.4 201 71.1
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.0e-79 300.4 205 69.3
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.3e-79 300.1 206 68.0
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 1.3e-79 300.1 207 71.0
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.8e-79 299.7 201 70.1
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 2.3e-79 299.3 206 70.9
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 2.3e-79 299.3 202 70.8
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 2.3e-79 299.3 201 70.1
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 3.9e-79 298.5 207 70.5
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 3.9e-79 298.5 207 70.5
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 3.9e-79 298.5 207 70.5
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.1e-79 298.1 197 71.6
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.1e-79 298.1 207 71.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.1e-79 298.1 204 71.1
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.7e-79 297.7 207 70.0
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 1.5e-78 296.6 207 70.0
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.9e-78 296.2 201 71.6
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 2.5e-78 295.8 201 69.2
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 3.3e-78 295.4 201 68.7
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 3.3e-78 295.4 201 69.7
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 4.3e-78 295.0 222 66.7
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 4.3e-78 295.0 200 74.0
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.6e-78 294.7 207 69.6
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 4.8e-77 291.6 191 73.3
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 4.8e-77 291.6 199 69.3
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 4.8e-77 291.6 207 68.1
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 6.2e-77 291.2 198 73.2
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 6.2e-77 291.2 203 69.0
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 8.1e-77 290.8 196 69.4
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 8.1e-77 290.8 206 69.4
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 8.1e-77 290.8 199 70.9
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.1e-76 290.4 199 68.8
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.4e-76 290.0 199 70.4
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.8e-76 289.7 217 65.4
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.8e-76 289.7 199 70.9
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 2.4e-76 289.3 200 70.0
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.4e-76 289.3 199 70.4
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 2.4e-76 289.3 199 69.8
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.4e-76 289.3 206 68.4
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 4.0e-76 288.5 206 69.9
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 5.3e-76 288.1 206 70.4
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 2.0e-75 286.2 199 69.3
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 5.8e-75 284.6 199 68.8
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.8e-74 282.0 200 67.0
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 4.9e-74 281.6 199 69.3
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 6.4e-74 281.2 199 69.3
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.1e-73 280.4 206 68.9
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.4e-73 280.0 200 69.5
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 1.9e-73 279.6 189 70.4
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 2.4e-73 279.3 199 69.8
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 5.5e-73 278.1 259 58.3
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 2.7e-72 275.8 200 65.5
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 3.5e-72 275.4 200 68.0
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 4.6e-72 275.0 198 69.2
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 7.9e-72 274.2 198 68.7
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.0e-71 273.9 200 66.0
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.8e-71 273.1 200 65.5
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 3.0e-71 272.3 208 67.3
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 3.0e-71 272.3 205 62.4
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 6.7e-71 271.2 200 64.0
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 1.1e-68 263.8 203 60.6
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.4e-68 263.5 201 61.7
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.1e-68 262.3 201 64.2
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 9.0e-68 260.8 201 61.2
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.0e-66 257.3 200 62.5
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 3.8e-66 255.4 201 65.2
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.5e-65 252.7 191 63.9
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 5.5e-65 251.5 203 58.1
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 9.3e-65 250.8 202 57.4
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 5.1e-63 245.0 206 57.8
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.8e-60 236.5 202 57.4
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 5.7e-54 214.9 212 50.5
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 3.1e-52 209.1 142 69.0
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.1e-52 208.8 135 74.1
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 2.0e-51 206.5 209 49.8
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 8.5e-50 201.1 203 51.2
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 9.4e-49 197.6 200 54.5
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 4.6e-48 195.3 139 67.6
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.6e-48 195.3 141 70.2
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.1e-47 191.8 141 70.2
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.3e-45 187.2 144 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 2.4e-44 183.0 206 44.7
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.6e-40 170.2 129 60.5
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.0e-39 167.5 166 53.6
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.0e-34 151.0 174 50.0
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 2.7e-27 126.3 195 39.0
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 6.5e-26 121.7 194 35.6
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 1.5e-25 120.6 69 84.1
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 9.4e-25 117.9 99 59.6
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 1.4e-23 114.0 125 45.6
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 4.0e-23 112.5 202 35.1
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.4e-22 109.0 77 62.3
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.2e-21 106.7 137 46.7
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.1e-20 104.4 66 71.2
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.8e-15 85.1 65 66.2
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 2.6e-14 83.2 65 60.0
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.4e-14 82.8 51 74.5
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 4.1e-12 75.9 72 58.3
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.0e-07 61.2 93 35.5
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.3e-07 60.1 46 60.9
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.3e-07 60.1 46 60.9
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 4.0e-07 59.3 50 50.0
arahy.Tifrunner.gnm1.ann1.W08ZR1 Arachis hypogaea HOM05D001932 ORTHO05D026884 5.2e-07 58.9 64 57.8
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 1.2e-06 57.8 81 40.7
FAN14G0250 Fragaria x ananassa HOM05D027595 ORTHO05D045540 3.4e-06 56.2 71 47.9
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 7.5e-06 55.1 64 45.3


User provided reference genes

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