Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 6.8e-51 203.8 106 100.0
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 1.3e-17 93.2 105 57.1
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 3.7e-17 91.7 99 58.6
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 2.1e-12 75.9 111 49.5
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 2.8e-12 75.5 110 41.8
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 3.6e-12 75.1 103 48.5
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 6.2e-12 74.3 113 43.4
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 6.2e-12 74.3 106 49.1
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 6.2e-12 74.3 110 43.6
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 8.1e-12 73.9 106 45.3
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 8.1e-12 73.9 114 47.4
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 4.0e-11 71.6 110 44.5
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 6.8e-11 70.9 93 44.1
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 6.8e-11 70.9 94 45.7
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 8.9e-11 70.5 111 42.3
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 1.2e-10 70.1 115 40.9
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.2e-10 70.1 115 40.9
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.2e-10 70.1 90 46.7
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.2e-10 70.1 115 40.9
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 1.2e-10 70.1 79 45.6
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 4.4e-10 68.2 103 47.6
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 4.4e-10 68.2 111 45.9
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 4.4e-10 68.2 89 48.3
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 5.8e-10 67.8 96 45.8
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 5.8e-10 67.8 98 46.9
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 5.8e-10 67.8 71 52.1
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 5.8e-10 67.8 113 44.2
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 9.9e-10 67.0 101 45.5
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 9.9e-10 67.0 77 49.4
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 1.3e-09 66.6 112 41.1
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.3e-09 66.6 99 41.4
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 2.2e-09 65.9 80 45.0
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.9e-09 65.5 94 44.7
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.8e-09 65.1 65 55.4
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 3.8e-09 65.1 85 44.7
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.9e-09 64.7 69 52.2
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.9e-09 64.7 69 52.2
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 8.4e-09 63.9 82 46.3
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.1e-08 63.5 71 53.5
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 1.4e-08 63.2 81 48.1
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.4e-08 63.2 75 45.3
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 1.9e-08 62.8 118 39.8
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.9e-08 62.8 98 41.8
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 2.4e-08 62.4 49 73.5
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 2.4e-08 62.4 110 44.5
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 3.2e-08 62.0 70 48.6
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.1e-08 61.6 66 54.5
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 5.4e-08 61.2 81 40.7
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 5.4e-08 61.2 104 39.4
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 5.4e-08 61.2 94 45.7
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 7.1e-08 60.8 77 50.6
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 9.2e-08 60.5 99 39.4
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 9.2e-08 60.5 99 39.4
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.2e-07 60.1 90 38.9
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.2e-07 60.1 87 44.8
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.2e-07 60.1 87 44.8
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.6e-07 59.7 110 43.6
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 1.6e-07 59.7 68 50.0
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.1e-07 59.3 114 41.2
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 2.7e-07 58.9 90 38.9
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 2.7e-07 58.9 77 48.1
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.5e-07 58.5 80 48.8
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 7.8e-07 57.4 114 40.4
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 7.8e-07 57.4 68 51.5
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 1.0e-06 57.0 78 44.9
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.0e-06 57.0 66 48.5
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.0e-06 57.0 59 50.8
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 1.3e-06 56.6 50 64.0
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 1.3e-06 56.6 50 64.0
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.3e-06 56.6 83 41.0
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.3e-06 56.6 82 41.5
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.7e-06 56.2 91 39.6
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 1.7e-06 56.2 88 42.0
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 2.3e-06 55.8 111 36.9
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.3e-06 55.8 113 37.2
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.3e-06 55.8 82 40.2
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 2.3e-06 55.8 82 40.2
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.3e-06 55.8 108 37.0
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 3.0e-06 55.5 109 38.5
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 3.0e-06 55.5 104 41.3
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 3.0e-06 55.5 96 38.5
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 3.9e-06 55.1 81 43.2
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 3.9e-06 55.1 104 42.3
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 3.9e-06 55.1 104 42.3
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 3.9e-06 55.1 104 42.3
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 3.9e-06 55.1 104 42.3
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 3.9e-06 55.1 81 40.7
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 3.9e-06 55.1 58 56.9
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 5.1e-06 54.7 83 43.4
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 5.1e-06 54.7 78 39.7
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 5.1e-06 54.7 87 40.2
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 6.6e-06 54.3 57 52.6
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 8.6e-06 53.9 92 40.2
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 8.6e-06 53.9 58 51.7


User provided reference genes

Program Settings