Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G011300 Glycine max HOM05D006765 ORTHO05D008554 9.4e-181 636.7 318 100.0
Glyma.02G302700 Glycine max HOM05D006765 ORTHO05D008554 1.4e-160 569.7 329 88.4
Phvul.008G281600 Phaseolus vulgaris HOM05D006765 ORTHO05D008554 8.6e-142 507.3 318 80.5
VMungo0647G1474 Vigna mungo HOM05D006765 ORTHO05D008554 1.3e-134 483.4 377 68.4
LjContig00081g0022778 Lotus japonicus HOM05D006765 ORTHO05D008554 1.1e-123 447.2 316 72.8
Medtr5g096560 Medicago truncatula HOM05D006765 ORTHO05D008554 2.2e-113 412.9 321 68.2
Psat2g006160 Pisum sativum HOM05D006765 ORTHO05D008554 7.1e-112 407.9 318 68.2
TPR.G1253 Trifolium pratense HOM05D006765 ORTHO05D008554 6.6e-110 401.4 323 66.9
Ca_06420_v3 Cicer arietinum L. HOM05D006765 ORTHO05D008554 2.4e-104 382.9 253 77.5
arahy.Tifrunner.gnm1.ann1.C7HE0M Arachis hypogaea HOM05D006765 ORTHO05D008554 3.6e-100 369.0 325 62.2
arahy.Tifrunner.gnm1.ann1.8KGR77 Arachis hypogaea HOM05D006765 ORTHO05D008554 1.0e-94 350.9 362 55.0
Lalb_Chr04g0247731 Lupinus albus HOM05D006765 ORTHO05D008554 7.1e-88 328.2 321 60.1
QL08p002606 Quercus lobata HOM05D006765 ORTHO05D008554 3.2e-72 276.2 318 53.1
COL.COLO4_07747 Corchorus olitorius HOM05D006765 ORTHO05D008554 3.6e-71 272.7 317 52.1
Duzib213G0912 Durio zibethinus HOM05D006765 ORTHO05D008554 1.3e-68 264.2 327 50.2
Cfa021898 Carpinus fangiana HOM05D006765 ORTHO05D008554 8.2e-68 261.5 314 50.0
Prupe.6G029100 Prunus persica HOM05D006765 ORTHO05D008554 9.1e-67 258.1 331 49.5
Gohir.A04G004500 Gossypium hirsutum HOM05D006765 ORTHO05D008554 1.2e-66 257.7 315 48.6
Gorai.009G452100 Gossypium raimondii HOM05D006765 ORTHO05D008554 1.2e-66 257.7 316 49.1
Manes.01G004100 Manihot esculenta HOM05D006765 ORTHO05D008554 7.7e-66 255.0 329 48.0
GSVIVG01014751001 Vitis vinifera HOM05D006765 ORTHO05D008554 2.2e-65 253.4 328 46.6
Gohir.D05G385400 Gossypium hirsutum HOM05D006765 ORTHO05D008554 5.0e-65 252.3 316 48.4
TWI38G1422 Tripterygium wilfordii HOM05D006765 ORTHO05D008554 3.2e-64 249.6 336 46.7
CiPaw.11G207500 Carya illinoinensis HOM05D006765 ORTHO05D008554 1.2e-63 247.7 284 50.7
Actinidia03654 Actinidia chinensis HOM05D006765 ORTHO05D008554 6.1e-63 245.4 331 45.9
Ciclev10008671m.g Citrus clementina HOM05D006765 ORTHO05D008554 7.9e-63 245.0 379 42.0
RcHm_v2.0_Chr5g0075451 Rosa chinensis HOM05D006765 ORTHO05D008554 7.9e-63 245.0 330 46.1
FAN11G3685 Fragaria x ananassa HOM05D006765 ORTHO05D008554 8.8e-62 241.5 330 47.0
Cpa.g.sc12.101 Carica papaya HOM05D006765 ORTHO05D008554 4.4e-61 239.2 325 45.2
Psat2g006040 Pisum sativum HOM05D006765 ORTHO05D008554 9.7e-61 238.0 321 48.0
FvH4_3g42180 Fragaria vesca HOM05D006765 ORTHO05D008554 1.7e-60 237.3 331 45.9
Lj1A895T73 Lonicera japonica HOM05D006765 ORTHO05D008554 2.8e-60 236.5 301 45.5
FAN25G2031 Fragaria x ananassa HOM05D006765 ORTHO05D008554 3.1e-59 233.0 345 44.6
Eucgr.F02021 Eucalyptus grandis HOM05D006765 ORTHO05D008554 4.1e-59 232.6 339 42.2
Dinv40889 Davidia involucrata HOM05D006765 ORTHO05D008554 2.0e-58 230.3 190 62.6
CSS0016155 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 4.5e-58 229.2 354 44.1
CSS0046328 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 4.5e-58 229.2 354 43.8
Potri.001G467400 Populus trichocarpa HOM05D006765 ORTHO05D008554 7.7e-58 228.4 375 40.3
Sabra16G0317200 Salix brachista HOM05D006765 ORTHO05D008554 1.4e-56 224.2 375 40.8
TAR629G2312 Trochodendron aralioides HOM05D006765 ORTHO05D008554 7.2e-56 221.9 347 42.9
Cc05_g15360 Coffea canephora HOM05D006765 ORTHO05D008554 9.4e-56 221.5 199 58.8
Haze_09874 Corylus avellana HOM05D006765 ORTHO05D008554 1.6e-55 220.7 247 52.6
FAN21G2411 Fragaria x ananassa HOM05D006765 ORTHO05D008554 2.7e-55 219.9 320 45.0
FAN16G0764 Fragaria x ananassa HOM05D006765 ORTHO05D008554 3.6e-55 219.5 224 55.8
Rhsim04G0010100 Rhododendron simsii HOM05D006765 ORTHO05D008554 8.0e-55 218.4 228 53.9
Hma1.2p1_1094F.1_g256340 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 3.9e-54 216.1 178 61.2
PGSC0003DMG400022157 Solanum tuberosum HOM05D006765 ORTHO05D008554 3.9e-54 216.1 287 45.6
Oeu005464.1 Olea europaea HOM05D006765 ORTHO05D008554 5.2e-54 215.7 314 43.0
Sopen07g034060 Solanum pennellii HOM05D006765 ORTHO05D008554 8.8e-54 214.9 287 44.6
Migut.M01623 Erythranthe guttata HOM05D006765 ORTHO05D008554 2.6e-53 213.4 283 45.6
CANSAT11G0072 Cannabis sativa HOM05D006765 ORTHO05D008554 3.3e-53 213.0 329 41.9
Nitab4.5_0000152g0290 Nicotiana tabacum HOM05D006765 ORTHO05D008554 3.3e-53 213.0 287 45.3
Peaxi162Scf00232g00025 Petunia axillaris HOM05D006765 ORTHO05D008554 3.3e-53 213.0 288 45.1
CAN.G623.40 Capsicum annuum HOM05D006765 ORTHO05D008554 1.3e-52 211.1 289 43.9
CsaV3_7G021520 Cucumis sativus L. HOM05D006765 ORTHO05D008554 1.3e-52 211.1 335 44.5
Solyc07g065870.3 Solanum lycopersicum HOM05D006765 ORTHO05D008554 2.2e-52 210.3 287 43.9
SGA_v2.0_scaffold168G38579 Striga asiatica HOM05D006765 ORTHO05D008554 2.2e-52 210.3 293 43.7
Sed0017860 Sechium edule HOM05D006765 ORTHO05D008554 4.8e-52 209.1 294 45.2
MBI15_g19869_MAGBIO Magnolia biondii HOM05D006765 ORTHO05D008554 6.3e-52 208.8 209 52.2
EL10Ac4g07518 Beta vulgaris HOM05D006765 ORTHO05D008554 8.2e-52 208.4 217 51.6
Nitab4.5_0003130g0010 Nicotiana tabacum HOM05D006765 ORTHO05D008554 1.1e-51 208.0 289 45.3
PGR083G0751 Punica granatum HOM05D006765 ORTHO05D008554 3.1e-51 206.5 371 37.2
ClCG09G021580 Citrullus lanatus HOM05D006765 ORTHO05D008554 9.1e-51 204.9 355 41.4
Lsat_1_v5_gn_7_114860 Lactuca sativa HOM05D006765 ORTHO05D008554 1.2e-50 204.5 199 54.8
Hund01854 Selenicereus undatus HOM05D006765 ORTHO05D008554 4.5e-50 202.6 161 63.4
Sc03g0011660 Simmondsia chinensis HOM05D006765 ORTHO05D008554 4.5e-50 202.6 191 55.5
MELO3C013197.2 Cucumis melo HOM05D006765 ORTHO05D008554 1.0e-49 201.4 335 42.7
AUR62035647 Chenopodium quinoa HOM05D006765 ORTHO05D008554 1.3e-49 201.1 266 47.0
Aqoxy2G01345 Aquilegia oxysepala HOM05D006765 ORTHO05D008554 3.8e-49 199.5 316 42.7
Ah.08g214160 Amaranthus hybridus HOM05D006765 ORTHO05D008554 5.0e-49 199.1 188 56.4
HanXRQChr15g0488021 Helianthus annuus HOM05D006765 ORTHO05D008554 1.1e-48 198.0 162 61.7
AUR62017157 Chenopodium quinoa HOM05D006765 ORTHO05D008554 2.5e-48 196.8 196 55.6
BraA01t04065Z Brassica rapa HOM05D006765 ORTHO05D008554 2.1e-47 193.7 225 45.8
Carub.0003s1262 Capsella rubella HOM05D006765 ORTHO05D008554 3.6e-47 193.0 328 36.9
BcaC09g48297 Brassica carinata HOM05D006765 ORTHO05D008554 1.0e-46 191.4 205 48.8
A01p40290 Brassica napus HOM05D006765 ORTHO05D008554 1.4e-46 191.0 225 45.8
DCAR_013261 Daucus carota HOM05D006765 ORTHO05D008554 1.8e-46 190.7 243 46.1
BolC1t05128H Brassica oleracea HOM05D006765 ORTHO05D008554 2.3e-46 190.3 205 48.3
C01p51810 Brassica napus HOM05D006765 ORTHO05D008554 4.0e-46 189.5 225 44.9
BcaB04g21007 Brassica carinata HOM05D006765 ORTHO05D008554 8.8e-46 188.3 174 53.4
PSO541G0333 Papaver somniferum HOM05D006765 ORTHO05D008554 8.8e-46 188.3 210 49.5
AL3G25050 Arabidopsis lyrata HOM05D006765 ORTHO05D008554 1.2e-45 188.0 238 42.4
PSO675G8178 Papaver somniferum HOM05D006765 ORTHO05D008554 1.5e-45 187.6 202 50.0
THA.LOC104801913 Tarenaya hassleriana HOM05D006765 ORTHO05D008554 1.5e-45 187.6 194 52.6
AT3G13226 Arabidopsis thaliana HOM05D006765 ORTHO05D008554 3.3e-45 186.4 217 44.2
Aa31LG8G470 Aethionema arabicum HOM05D006765 ORTHO05D008554 4.4e-45 186.0 330 36.4
CARHR087860 Cardamine hirsuta HOM05D006765 ORTHO05D008554 4.4e-45 186.0 332 36.4
Thhalv10020892m.g Eutrema salsugineum HOM05D006765 ORTHO05D008554 4.4e-45 186.0 234 43.6
Nn1g07719 Nelumbo nucifera HOM05D006765 ORTHO05D008554 1.3e-44 184.5 199 48.7
Sp3g11440 Schrenkiella parvula HOM05D006765 ORTHO05D008554 1.7e-44 184.1 168 52.4
Zm00001eb433160 Zea mays HOM05D006765 ORTHO05D008554 2.2e-44 183.7 163 54.6
ECA236G1773 Erigeron canadensis HOM05D006765 ORTHO05D008554 2.8e-44 183.3 208 49.0
SalBow8G5524 Salvia bowleyana HOM05D006765 ORTHO05D008554 3.7e-44 183.0 331 38.7
Os04g0667900 Oryza sativa ssp. japonica HOM05D006765 ORTHO05D008554 5.3e-43 179.1 191 48.2
Prupe.6G082900 Prunus persica HOM05D006765 ORTHO05D008554 5.3e-43 179.1 194 53.1
vmacro09619 Vaccinium macrocarpon HOM05D006765 ORTHO05D008554 2.5e-40 170.2 261 41.8
Thecc.07G007200 Theobroma cacao HOM05D006765 ORTHO05D008554 4.7e-39 166.0 231 47.6
MD03G1037000 Malus domestica HOM05D006765 ORTHO05D008554 8.0e-39 165.2 119 68.1
ATR0751G181 Amborella trichopoda HOM05D006765 ORTHO05D008554 1.8e-38 164.1 173 50.3
Prupe.6G029900 Prunus persica HOM05D006765 ORTHO05D008554 4.1e-35 152.9 185 51.9
Pp3c19_18350 Physcomitrium patens HOM05D006765 ORTHO05D008554 9.5e-32 141.7 214 36.4
CDE04G0216 Ceratophyllum demersum HOM05D006765 ORTHO05D008554 1.2e-29 134.8 130 49.2
SEGI_27535 Sequoiadendron giganteum HOM05D006765 ORTHO05D008554 7.8e-26 122.1 120 49.2
SMO115G0196 Selaginella moellendorffii HOM05D006765 ORTHO05D008554 1.2e-23 114.8 209 33.5
Sed0007098 Sechium edule HOM05D006765 ORTHO05D008554 2.1e-23 114.0 242 36.8
Mapoly0047s0103 Marchantia polymorpha HOM05D006765 ORTHO05D008554 1.3e-20 104.8 169 33.7
MCO16G170 Micromonas commoda HOM05D006765 ORTHO05D008554 5.8e-13 79.3 192 28.6
Hma1.2p1_1094F.1_g256330 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 1.1e-11 75.1 184 34.2
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 7.0e-11 72.4 86 43.0


User provided reference genes

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