Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 2.3e-265 918.3 457 100.0
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 2.0e-237 825.5 461 90.5
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 8.9e-233 810.1 461 89.2
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 4.0e-217 758.1 460 85.0
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 2.6e-216 755.4 462 84.8
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 7.8e-213 743.8 464 82.1
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 1.7e-212 742.7 388 97.2
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 8.6e-212 740.3 462 83.1
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 6.2e-210 734.2 463 81.4
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 1.4e-209 733.0 463 80.8
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 3.2e-206 721.8 465 80.4
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.0e-196 690.3 393 88.3
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 6.7e-196 687.6 462 76.8
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 2.5e-195 685.6 462 76.6
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 9.6e-195 683.7 458 76.0
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 3.1e-193 678.7 418 81.8
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 5.3e-193 677.9 448 76.3
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 9.0e-193 677.2 432 79.4
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 9.0e-193 677.2 419 80.9
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 2.6e-192 675.6 421 81.0
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 5.8e-192 674.5 455 76.5
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.9e-191 672.2 431 78.4
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 6.4e-191 671.0 405 81.2
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 8.4e-191 670.6 459 74.9
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 3.2e-190 668.7 396 83.1
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 3.2e-190 668.7 459 74.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 3.2e-190 668.7 405 81.7
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 7.1e-190 667.5 405 82.0
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 2.1e-189 666.0 410 80.7
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 4.6e-189 664.8 405 81.5
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.0e-188 663.7 454 74.0
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.8e-188 662.9 455 74.3
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 3.0e-188 662.1 458 73.1
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 3.0e-188 662.1 428 78.7
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 3.9e-188 661.8 426 77.2
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 5.1e-188 661.4 455 74.1
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 6.7e-188 661.0 462 73.6
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.3e-187 658.7 455 73.8
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 4.3e-187 658.3 427 75.6
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.3e-186 656.8 457 72.9
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.6e-186 656.4 390 83.1
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 3.7e-186 655.2 454 72.2
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.4e-185 653.3 457 73.1
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 2.4e-185 652.5 457 73.1
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 4.0e-185 651.7 455 73.0
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 5.3e-185 651.4 400 81.0
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 6.9e-185 651.0 411 77.6
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 1.2e-184 650.2 413 77.5
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.2e-184 650.2 388 82.0
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.5e-184 649.8 411 77.4
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 2.0e-184 649.4 389 81.7
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 2.0e-184 649.4 435 75.2
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 2.6e-184 649.0 467 71.1
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 4.5e-184 648.3 378 82.5
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.8e-184 647.9 427 74.5
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 7.6e-184 647.5 378 82.5
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.0e-183 647.1 388 81.7
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.0e-183 647.1 391 81.1
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.3e-183 646.7 455 71.9
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.3e-183 646.7 395 79.0
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.3e-183 646.7 467 70.9
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 2.2e-183 646.0 427 74.5
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 2.9e-183 645.6 434 74.7
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 3.8e-183 645.2 413 77.0
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 4.9e-183 644.8 373 83.6
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 4.9e-183 644.8 384 81.8
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 4.9e-183 644.8 384 81.5
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 4.9e-183 644.8 427 75.9
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 1.1e-182 643.7 422 75.6
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.1e-182 643.7 438 75.1
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.4e-182 643.3 438 74.4
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.9e-182 642.9 438 74.9
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.9e-182 642.9 374 82.4
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.5e-182 642.5 395 78.5
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.5e-182 642.5 389 81.0
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 4.2e-182 641.7 374 82.6
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 5.5e-182 641.3 391 81.1
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.5e-182 641.3 438 74.4
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 5.5e-182 641.3 376 84.3
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 5.5e-182 641.3 399 80.7
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 1.2e-181 640.2 399 80.7
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.6e-181 639.8 388 80.7
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 2.7e-181 639.0 414 76.6
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 4.6e-181 638.3 430 74.9
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 4.6e-181 638.3 452 71.7
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 6.0e-181 637.9 435 74.3
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.0e-180 635.6 405 78.3
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 3.0e-180 635.6 391 81.1
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 5.1e-180 634.8 427 75.6
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.1e-179 633.6 389 79.2
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 7.4e-179 630.9 394 77.9
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.3e-178 630.2 437 72.3
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.6e-178 629.8 385 81.0
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 2.1e-178 629.4 389 79.9
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.4e-177 626.7 434 71.7
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.4e-177 625.9 438 71.2
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 3.1e-177 625.5 406 76.4
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 4.1e-177 625.2 395 78.2
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 2.2e-175 619.4 528 62.9
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 3.2e-174 615.5 376 78.7
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 1.9e-171 606.3 370 80.5
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.6e-170 603.2 414 72.0
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 3.1e-169 599.0 371 79.0
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.2e-167 592.8 390 73.6
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 5.5e-166 588.2 381 73.5
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.4e-153 546.2 403 70.5
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 5.3e-153 545.0 357 73.4
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 1.5e-147 526.9 455 62.9
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 2.8e-146 522.7 409 64.3
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 9.1e-145 517.7 422 63.5
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 4.2e-142 508.8 456 60.7
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.2e-141 507.3 406 65.8
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.0e-140 504.2 353 70.3
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.3e-138 497.3 293 81.2
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.5e-136 488.8 387 62.5
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 3.8e-135 485.7 345 68.1
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.5e-134 483.8 344 73.0
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.8e-132 476.9 359 66.6
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.8e-132 474.6 276 82.6
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.6e-128 463.8 374 62.0
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 4.7e-125 452.2 276 78.3
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 7.0e-121 438.3 274 78.8
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.5e-120 436.0 289 73.7
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.2e-115 421.0 437 54.5
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.4e-113 414.1 325 66.5
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.3e-110 402.9 252 77.4
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.8e-109 399.8 287 69.0
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 5.1e-103 379.0 307 66.8
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 4.1e-97 359.4 250 73.2
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 2.7e-96 356.7 358 53.6
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.7e-95 354.0 210 82.9
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.2e-93 347.8 240 73.8
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 2.0e-91 340.5 218 77.1
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 2.0e-91 340.5 331 51.4
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 2.8e-85 320.1 201 74.1
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 2.4e-84 317.0 226 71.7
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.6e-77 294.3 211 69.2
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 7.1e-73 278.9 174 78.2
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 3.0e-63 246.9 159 75.5
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 2.4e-60 237.3 340 41.5
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 4.1e-60 236.5 159 73.6
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 6.5e-58 229.2 135 83.7
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 7.2e-57 225.7 124 83.1
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 3.9e-55 219.9 291 42.6
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 5.0e-50 203.0 159 68.6
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 5.2e-39 166.4 112 76.8
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.1e-36 157.1 84 86.9
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 2.6e-35 154.1 111 73.0
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.0e-34 152.1 115 67.0
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 3.6e-32 143.7 121 62.8
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.2e-27 128.6 77 83.1
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 8.0e-24 115.9 77 74.0
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 1.7e-21 108.2 230 34.3
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 2.2e-21 107.8 116 55.2
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 2.9e-18 97.4 59 88.1
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 7.2e-17 92.8 59 84.7
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 5.2e-15 86.7 68 63.2
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 1.5e-14 85.1 50 76.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 3.4e-14 84.0 58 60.3
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 2.3e-10 71.2 42 76.2
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 5.8e-06 56.6 220 25.9


User provided reference genes

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