Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 4.6e-205 717.6 349 100.0
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 4.9e-183 644.4 351 91.2
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 1.1e-137 493.8 356 71.6
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 1.4e-137 493.4 355 70.7
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 4.1e-137 491.9 353 70.8
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 3.5e-136 488.8 357 70.9
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 2.5e-134 482.6 344 72.1
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 1.2e-133 480.3 347 70.6
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 1.4e-129 466.8 353 68.0
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 4.0e-124 448.7 350 67.4
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 3.4e-123 445.7 350 67.1
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 1.1e-121 440.7 349 65.0
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 7.1e-89 331.6 346 50.6
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.6e-88 330.5 346 50.6
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 1.0e-87 327.8 347 51.9
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 1.0e-87 327.8 346 51.7
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 1.7e-87 327.0 347 50.7
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.9e-87 325.9 344 50.9
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 5.1e-87 325.5 346 51.4
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 8.6e-87 324.7 346 49.7
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 1.9e-86 323.6 352 50.6
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.3e-86 322.8 344 50.6
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 3.3e-86 322.8 347 50.4
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 5.6e-86 322.0 346 50.6
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 9.6e-86 321.2 348 51.1
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 1.2e-85 320.9 358 49.2
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 2.1e-85 320.1 346 50.3
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 4.7e-85 318.9 344 50.3
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 6.2e-85 318.5 346 50.3
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.1e-84 317.8 347 50.1
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 1.8e-84 317.0 355 50.7
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 3.1e-84 316.2 325 52.3
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 5.2e-84 315.5 347 49.6
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.2e-83 314.3 344 50.3
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 1.5e-83 313.9 351 49.6
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.5e-83 313.9 346 49.7
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 5.8e-83 312.0 347 49.0
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 7.6e-83 311.6 355 49.9
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 1.3e-82 310.8 353 49.3
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 1.1e-81 307.8 346 48.6
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 7.1e-81 305.1 344 48.3
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 7.8e-80 301.6 357 48.5
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 8.7e-79 298.1 349 47.6
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 1.1e-78 297.7 349 47.0
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 1.1e-78 297.7 349 47.9
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 2.5e-78 296.6 349 47.0
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 5.6e-78 295.4 349 47.9
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 5.6e-78 295.4 349 47.9
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 1.3e-77 294.3 349 47.6
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 1.6e-77 293.9 351 45.9
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 2.8e-77 293.1 349 47.6
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 2.8e-77 293.1 354 48.9
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 3.6e-77 292.7 349 47.0
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 4.8e-77 292.4 348 46.3
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 4.8e-77 292.4 352 47.7
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 6.2e-77 292.0 349 47.3
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 8.1e-77 291.6 349 45.6
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 1.1e-76 291.2 347 45.2
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 1.4e-76 290.8 352 48.0
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 1.8e-76 290.4 351 45.3
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 1.8e-76 290.4 347 48.1
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 4.0e-76 289.3 351 44.4
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 9.0e-76 288.1 349 47.0
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 1.2e-75 287.7 344 46.2
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.5e-75 287.3 348 45.1
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 3.4e-75 286.2 350 45.7
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 3.4e-75 286.2 349 47.0
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 4.5e-75 285.8 349 46.1
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 5.8e-75 285.4 348 45.4
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 7.6e-75 285.0 351 43.9
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 7.6e-75 285.0 352 44.9
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 9.9e-75 284.6 346 43.9
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 9.9e-75 284.6 359 44.0
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 3.8e-74 282.7 361 43.5
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 4.9e-74 282.3 354 43.5
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 4.2e-73 279.3 371 45.3
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 1.6e-72 277.3 345 43.8
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 1.6e-72 277.3 346 44.5
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 3.5e-72 276.2 350 44.6
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 4.6e-72 275.8 350 44.6
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 7.9e-72 275.0 351 45.3
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.1e-70 271.2 348 44.8
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.9e-70 270.4 345 46.4
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 2.5e-70 270.0 341 44.0
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 4.3e-70 269.2 342 43.9
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 9.6e-70 268.1 346 42.8
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 6.2e-69 265.4 356 43.5
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 1.8e-68 263.8 346 42.8
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 4.0e-68 262.7 350 40.9
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 1.2e-67 261.2 351 43.0
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 3.4e-67 259.6 368 41.0
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 7.6e-67 258.5 296 46.3
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 9.9e-67 258.1 367 43.1
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.7e-66 257.3 343 42.6
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 1.7e-66 257.3 349 43.0
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 2.9e-66 256.5 359 41.2
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 4.9e-66 255.8 356 44.1
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.4e-65 254.2 365 42.5
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 1.9e-65 253.8 356 43.5
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 7.1e-65 251.9 349 42.4
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 2.1e-64 250.4 348 40.8
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 6.0e-64 248.8 355 41.4
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 7.9e-64 248.4 355 42.0
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 1.3e-63 247.7 358 40.5
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 5.6e-62 242.3 283 45.9
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 4.2e-57 226.1 355 39.7
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 1.3e-55 221.1 340 39.7
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 8.7e-55 218.4 229 52.0
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.8e-53 213.4 347 39.8
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 3.7e-53 213.0 347 40.1
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 8.2e-53 211.8 207 51.7
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 2.4e-52 210.3 347 39.2
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 7.6e-51 205.3 284 42.3
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.0e-50 204.9 274 44.2
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 6.5e-50 202.2 352 37.5
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.1e-44 183.0 360 33.3
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.2e-42 177.2 384 31.8
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.2e-42 177.2 384 31.8
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 8.5e-42 175.3 322 33.9
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.9e-41 174.1 228 41.2
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 4.7e-40 169.5 346 33.2
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 2.7e-32 143.7 259 31.7
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 1.1e-30 138.3 337 33.5
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 4.5e-27 126.3 115 50.4
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 1.6e-11 74.7 132 34.8


User provided reference genes

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