Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G002600 Glycine max HOM05D011327 ORTHO05D013488 1.8e-54 215.7 110 100.0
Glyma.02G310100 Glycine max HOM05D011327 ORTHO05D013488 1.2e-37 159.8 101 86.1
Phvul.008G290900 Phaseolus vulgaris HOM05D011327 ORTHO05D013488 6.2e-31 137.5 104 72.1
arahy.Tifrunner.gnm1.ann1.68BC0Z Arachis hypogaea HOM05D011327 ORTHO05D013488 1.2e-21 106.7 128 46.1
VMungo0540G1396 Vigna mungo HOM05D011327 ORTHO05D013488 1.9e-19 99.4 108 52.8
Lalb_Chr22g0360811 Lupinus albus HOM05D011327 ORTHO05D013488 3.5e-18 95.1 110 51.8
Lalb_Chr14g0362711 Lupinus albus HOM05D011327 ORTHO05D013488 5.1e-17 91.3 112 51.8
arahy.Tifrunner.gnm1.ann1.BN4LR6 Arachis hypogaea HOM05D011327 ORTHO05D013488 1.5e-16 89.7 74 55.4
Medtr3g081210 Medicago truncatula HOM05D011327 ORTHO05D013488 3.3e-16 88.6 109 49.5
Phvul.006G001900 Phaseolus vulgaris HOM05D011327 ORTHO05D013488 9.6e-16 87.0 110 49.1
Glyma.20G065500 Glycine max HOM05D011327 ORTHO05D013488 8.1e-15 84.0 106 48.1
Lj6g0025708 Lotus japonicus HOM05D011327 ORTHO05D013488 8.1e-15 84.0 105 50.5
Lj6g0020629 Lotus japonicus HOM05D011327 ORTHO05D013488 5.2e-14 81.3 107 48.6
Lj6g0014429 Lotus japonicus HOM05D011327 ORTHO05D013488 1.5e-13 79.7 107 47.7
Psat5g108040 Pisum sativum HOM05D011327 ORTHO05D013488 6.4e-12 74.3 107 44.9
TPR.G33559 Trifolium pratense HOM05D011327 ORTHO05D013488 2.1e-10 69.3 107 39.3
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 4.6e-10 68.2 112 42.0
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 4.6e-10 68.2 119 38.7
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 4.6e-10 68.2 114 40.4
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.3e-09 66.6 110 38.2
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.7e-09 66.2 115 37.4
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 5.1e-09 64.7 111 38.7
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 6.6e-09 64.3 116 41.4
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 8.7e-09 63.9 119 37.8
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 1.9e-08 62.8 110 36.4
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 2.5e-08 62.4 113 38.9
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 2.5e-08 62.4 115 39.1
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 2.5e-08 62.4 119 40.3
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 2.5e-08 62.4 111 36.9
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 4.3e-08 61.6 113 37.2
PGR004G2368 Punica granatum HOM05D002924 ORTHO05D003122 4.3e-08 61.6 117 38.5
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 4.3e-08 61.6 118 36.4
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 4.3e-08 61.6 116 36.2
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 4.3e-08 61.6 121 38.0
Cc02_g30950 Coffea canephora HOM05D002924 ORTHO05D003122 5.6e-08 61.2 108 35.2
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 9.6e-08 60.5 113 38.1
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.3e-07 60.1 120 35.8
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 1.3e-07 60.1 111 35.1
Psat0s2707g0200 Pisum sativum HOM05D011327 ORTHO05D013488 1.3e-07 60.1 88 42.0
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 1.3e-07 60.1 106 37.7
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 1.6e-07 59.7 132 32.6
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.1e-07 59.3 76 44.7
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 2.8e-07 58.9 129 35.7
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 3.6e-07 58.5 111 39.6
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 3.6e-07 58.5 110 36.4
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 3.6e-07 58.5 114 37.7
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 3.6e-07 58.5 113 38.9
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 3.6e-07 58.5 109 39.4
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 4.8e-07 58.2 113 40.7
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 4.8e-07 58.2 123 35.8
Solyc08g036505.2 Solanum lycopersicum HOM05D002924 ORTHO05D003122 4.8e-07 58.2 110 34.5
FvH4_3g05370 Fragaria vesca HOM05D002924 ORTHO05D003122 6.2e-07 57.8 118 36.4
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 6.2e-07 57.8 111 38.7
Lalb_Chr18g0055361 Lupinus albus HOM05D002924 ORTHO05D003122 6.2e-07 57.8 126 34.1
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 8.1e-07 57.4 111 38.7
Sed0027890 Sechium edule HOM05D002924 ORTHO05D003122 8.1e-07 57.4 80 38.8
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.1e-06 57.0 112 34.8
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.1e-06 57.0 112 34.8
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 1.1e-06 57.0 116 39.7
Dinv20268 Davidia involucrata HOM05D002924 ORTHO05D003122 1.4e-06 56.6 97 40.2
FAN25G1226 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.4e-06 56.6 119 36.1
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.4e-06 56.6 112 34.8
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.4e-06 56.6 110 34.5
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 1.8e-06 56.2 73 43.8
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 1.8e-06 56.2 74 44.6
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.8e-06 56.2 118 38.1
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.8e-06 56.2 75 42.7
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 1.8e-06 56.2 108 37.0
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.8e-06 56.2 124 32.3
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 2.4e-06 55.8 118 35.6
HanXRQChr04g0114381 Helianthus annuus HOM05D002924 ORTHO05D003122 2.4e-06 55.8 114 35.1
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 2.4e-06 55.8 110 34.5
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 2.4e-06 55.8 110 36.4
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 2.4e-06 55.8 116 35.3
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 3.1e-06 55.5 113 37.2
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 3.1e-06 55.5 119 35.3
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 3.1e-06 55.5 120 36.7
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.0e-06 55.1 119 35.3
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 4.0e-06 55.1 117 35.0
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 4.0e-06 55.1 117 35.0
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 4.0e-06 55.1 111 38.7
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 4.0e-06 55.1 109 36.7
MD17G1127000 Malus domestica HOM05D002924 ORTHO05D003122 4.0e-06 55.1 102 33.3
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 4.0e-06 55.1 110 32.7
THA.LOC104812674 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 4.0e-06 55.1 112 36.6
BraA04t18154Z Brassica rapa HOM05D002924 ORTHO05D003122 5.3e-06 54.7 103 35.0
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 5.3e-06 54.7 116 37.9
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 5.3e-06 54.7 73 41.1
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 6.9e-06 54.3 115 40.9
A04p26500 Brassica napus HOM05D002924 ORTHO05D003122 6.9e-06 54.3 103 36.9
C04p63920 Brassica napus HOM05D002924 ORTHO05D003122 6.9e-06 54.3 103 36.9
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 6.9e-06 54.3 119 35.3
SGA_v2.0_scaffold223G42810 Striga asiatica HOM05D002924 ORTHO05D003122 6.9e-06 54.3 119 38.7
ClCG07G010850 Citrullus lanatus HOM05D002924 ORTHO05D003122 9.0e-06 53.9 79 38.0
FAN11G1040 Fragaria x ananassa HOM05D002924 ORTHO05D003122 9.0e-06 53.9 119 36.1
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 9.0e-06 53.9 109 34.9
Solyc08g036640.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 9.0e-06 53.9 107 38.3
Sopen08g011400 Solanum pennellii HOM05D002924 ORTHO05D003122 9.0e-06 53.9 107 38.3


User provided reference genes

Program Settings