Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.9e-127 459.1 226 100.0
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 3.4e-108 395.2 226 82.7
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 1.3e-107 393.3 224 84.4
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 1.1e-106 390.2 224 83.5
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 2.3e-104 382.5 222 83.8
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 4.3e-103 378.3 223 81.6
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 2.6e-100 369.0 223 79.8
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 4.6e-97 358.2 224 75.9
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 9.5e-95 350.5 224 74.6
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 1.5e-92 343.2 224 73.2
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 4.4e-92 341.7 225 74.2
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 7.6e-92 340.9 225 72.9
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 2.9e-91 339.0 225 72.0
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 3.7e-91 338.6 221 72.9
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 4.9e-91 338.2 224 72.8
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 8.3e-91 337.4 224 72.8
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 5.4e-90 334.7 224 70.1
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 9.2e-90 334.0 225 71.6
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 1.2e-89 333.6 225 70.2
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 2.1e-89 332.8 225 72.0
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 4.6e-89 331.6 226 71.7
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 7.8e-89 330.9 224 70.5
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 1.1e-87 327.0 225 69.3
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 1.1e-87 327.0 220 70.0
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 1.9e-87 326.2 222 70.3
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 3.3e-87 325.5 246 64.6
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.2e-86 323.6 225 69.8
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.2e-86 323.6 223 70.9
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 2.1e-86 322.8 240 66.7
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 1.1e-85 320.5 226 69.0
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 2.4e-85 319.3 225 69.3
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 3.1e-85 318.9 223 68.2
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 4.0e-85 318.5 225 68.9
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 5.2e-85 318.2 225 68.4
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 1.2e-84 317.0 221 69.7
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 1.2e-84 317.0 226 65.5
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 2.0e-84 316.2 225 68.4
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 2.0e-84 316.2 225 68.9
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 2.0e-84 316.2 225 67.6
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 9.9e-84 313.9 225 67.6
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 1.7e-83 313.2 225 66.2
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 4.9e-83 311.6 225 67.1
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 4.9e-83 311.6 225 65.3
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 1.1e-82 310.5 222 66.2
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.1e-82 310.5 223 65.5
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 2.4e-82 309.3 227 67.4
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 2.4e-82 309.3 226 65.9
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.4e-82 309.3 225 64.4
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.4e-82 309.3 225 65.8
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 4.2e-82 308.5 220 67.7
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 5.4e-82 308.1 231 65.4
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 5.4e-82 308.1 232 64.7
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 7.1e-82 307.8 224 63.8
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 9.3e-82 307.4 220 67.3
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 1.6e-81 306.6 225 64.9
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 2.7e-81 305.8 224 66.1
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.5e-81 305.4 225 65.3
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 3.5e-81 305.4 224 63.8
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 4.6e-81 305.1 225 64.9
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 4.6e-81 305.1 225 65.3
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 6.0e-81 304.7 225 64.0
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 6.0e-81 304.7 222 64.0
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 7.8e-81 304.3 222 64.9
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 3.0e-80 302.4 226 63.3
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 3.0e-80 302.4 226 64.6
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 1.9e-79 299.7 223 65.5
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 1.9e-79 299.7 224 62.9
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 3.3e-79 298.9 220 65.9
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 3.3e-79 298.9 226 66.4
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 3.3e-79 298.9 221 63.8
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 4.3e-79 298.5 224 62.9
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 9.6e-79 297.4 208 67.8
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 1.6e-78 296.6 225 65.8
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.8e-78 295.8 223 65.5
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 6.2e-78 294.7 226 65.0
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 1.2e-76 290.4 221 65.6
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.8e-75 285.4 244 59.0
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 4.9e-75 285.0 231 61.0
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.9e-74 283.1 244 59.0
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 4.2e-74 282.0 220 60.9
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.2e-74 282.0 244 59.0
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 2.3e-72 276.2 224 61.2
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 2.5e-71 272.7 162 79.0
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 6.2e-70 268.1 229 58.5
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 6.2e-70 268.1 229 58.5
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 6.9e-69 264.6 235 53.6
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 8.4e-67 257.7 161 73.9
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 7.9e-65 251.1 223 56.1
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 2.5e-63 246.1 221 57.0
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 8.1e-62 241.1 144 75.0
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 1.1e-61 240.7 170 68.8
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.0e-60 236.5 234 55.6
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 3.4e-60 235.7 161 69.6
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.7e-59 233.4 234 55.1
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 4.9e-59 231.9 172 66.3
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 8.4e-59 231.1 161 66.5
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 3.2e-58 229.2 221 53.8
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 1.2e-57 227.3 175 62.9
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 4.8e-54 215.3 143 70.6
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 2.4e-53 213.0 218 51.4
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 3.4e-52 209.1 226 45.1
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 4.5e-52 208.8 173 61.3
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 7.6e-52 208.0 222 45.5
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 2.5e-50 203.0 220 47.7
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 4.2e-50 202.2 169 56.8
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 3.5e-49 199.1 169 56.2
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 2.8e-46 189.5 126 69.8
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 8.2e-46 188.0 126 69.0
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 8.2e-46 188.0 250 43.2
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 9.7e-39 164.5 126 64.3
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 2.2e-38 163.3 102 72.5
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 9.1e-37 157.9 144 59.0
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 5.9e-36 155.2 106 70.8
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 3.2e-34 149.4 116 63.8
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 7.9e-33 144.8 146 54.1
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 4.7e-25 119.0 227 34.8
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 1.1e-18 97.8 89 53.9
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 1.1e-18 97.8 89 53.9
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.4e-13 79.0 63 57.1
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 1.2e-12 77.8 55 65.5
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 1.2e-12 77.8 55 65.5
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 4.5e-12 75.9 49 71.4
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 2.6e-07 60.1 186 27.4


User provided reference genes

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