Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 1.5e-65 252.7 126 100.0
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 9.8e-49 196.8 137 80.3
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.8e-34 149.4 138 62.3
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 2.9e-32 142.1 134 63.4
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 5.1e-29 131.3 130 56.2
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 2.8e-27 125.6 130 55.4
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 2.8e-27 125.6 120 53.3
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 4.7e-27 124.8 125 54.4
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 6.2e-27 124.4 122 56.6
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.1e-26 123.6 122 56.6
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.8e-26 122.9 129 53.5
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.8e-26 122.9 127 52.8
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.4e-26 122.5 127 55.1
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 4.0e-26 121.7 127 55.1
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 6.8e-26 120.9 130 51.5
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 6.8e-26 120.9 130 52.3
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 2.6e-25 119.0 126 61.9
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 3.4e-25 118.6 132 50.8
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 3.4e-25 118.6 132 50.8
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 4.4e-25 118.2 132 50.8
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 5.8e-25 117.9 132 50.8
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 5.8e-25 117.9 125 52.0
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 7.6e-25 117.5 136 50.0
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.3e-24 116.7 136 50.0
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.7e-24 116.3 132 47.0
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 1.7e-24 116.3 130 50.0
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 2.2e-24 115.9 134 48.5
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 2.9e-24 115.5 125 53.6
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.8e-24 115.2 129 51.9
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 3.8e-24 115.2 129 51.9
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 3.8e-24 115.2 131 48.1
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 6.4e-24 114.4 136 48.5
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 8.4e-24 114.0 125 52.0
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.4e-23 113.2 136 49.3
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 9.3e-23 110.5 130 49.2
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 9.3e-23 110.5 124 51.6
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 1.2e-22 110.2 113 51.3
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.6e-22 109.8 126 51.6
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.7e-22 109.0 124 54.8
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 3.5e-22 108.6 129 51.9
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 4.6e-22 108.2 125 48.8
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 4.6e-22 108.2 131 47.3
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 7.8e-22 107.5 121 47.1
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 7.8e-22 107.5 125 50.4
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 7.8e-22 107.5 124 50.0
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 7.8e-22 107.5 131 47.3
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.7e-21 106.3 107 55.1
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.3e-21 105.9 122 49.2
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 3.0e-21 105.5 138 47.8
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 3.9e-21 105.1 125 49.6
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.9e-21 105.1 121 51.2
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 3.3e-20 102.1 135 44.4
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 4.3e-20 101.7 123 51.2
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 4.3e-20 101.7 138 43.5
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 4.3e-20 101.7 138 43.5
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 4.3e-20 101.7 120 48.3
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 5.6e-20 101.3 125 51.2
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 7.3e-20 100.9 130 51.5
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 9.6e-20 100.5 138 44.9
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 9.6e-20 100.5 138 44.2
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 9.6e-20 100.5 125 48.0
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.6e-19 99.8 138 47.8
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 2.1e-19 99.4 131 46.6
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.8e-19 99.0 136 42.6
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 2.8e-19 99.0 127 45.7
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 4.8e-19 98.2 128 44.5
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 6.2e-19 97.8 127 46.5
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 8.1e-19 97.4 127 46.5
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 8.1e-19 97.4 118 49.2
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.1e-18 97.1 126 46.8
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 1.4e-18 96.7 91 58.2
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 1.8e-18 96.3 136 42.6
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 2.4e-18 95.9 131 42.7
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 3.1e-18 95.5 126 46.0
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 3.1e-18 95.5 135 42.2
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 5.3e-18 94.7 149 40.3
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 6.9e-18 94.4 126 47.6
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 6.9e-18 94.4 136 45.6
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 6.9e-18 94.4 136 57.4
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 6.9e-18 94.4 123 43.9
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 9.0e-18 94.0 121 47.9
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.2e-17 93.6 127 44.9
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.2e-17 93.6 126 47.6
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.2e-17 93.6 132 38.6
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.2e-17 93.6 138 39.1
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 1.5e-17 93.2 128 46.9
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.5e-17 93.2 128 46.9
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.5e-17 93.2 126 46.8
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 2.0e-17 92.8 138 39.9
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 2.6e-17 92.4 131 44.3
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.4e-17 92.0 138 44.2
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 7.6e-17 90.9 115 50.4
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 1.7e-16 89.7 129 51.2
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.9e-16 89.0 124 38.7
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 3.8e-16 88.6 126 42.1
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 6.4e-16 87.8 108 50.0
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 6.4e-16 87.8 122 43.4
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.4e-15 86.7 93 54.8
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.4e-15 86.7 135 48.1
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 2.4e-15 85.9 106 50.0
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 2.4e-15 85.9 123 43.1
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 5.4e-15 84.7 131 45.8
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 5.4e-15 84.7 131 45.8
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 5.4e-15 84.7 113 43.4
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 7.1e-15 84.3 132 40.2
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 1.2e-14 83.6 131 45.8
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 1.2e-14 83.6 131 45.8
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 1.2e-14 83.6 131 45.8
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 1.2e-14 83.6 114 44.7
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.6e-14 83.2 114 44.7
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.6e-14 83.2 117 41.0
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 2.1e-14 82.8 125 40.0
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 3.5e-14 82.0 80 52.5
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 6.0e-14 81.3 114 50.0
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 7.9e-14 80.9 102 44.1
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 7.9e-14 80.9 117 49.6
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.3e-13 80.1 129 46.5
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 2.3e-13 79.3 132 38.6
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 5.1e-13 78.2 122 46.7
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 8.7e-13 77.4 129 45.0
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 2.5e-12 75.9 64 48.4
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.3e-12 75.5 115 46.1
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.3e-11 73.6 113 47.8
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 2.1e-11 72.8 110 41.8
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.8e-11 72.4 123 37.4
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 4.8e-11 71.6 132 37.9
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 6.2e-11 71.2 124 45.2
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 3.1e-10 68.9 136 40.4
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 6.9e-10 67.8 60 46.7
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 9.0e-10 67.4 117 43.6
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 5.8e-09 64.7 112 46.4
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.7e-08 63.2 50 56.0
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.9e-07 59.7 92 40.2
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 1.6e-06 56.6 43 51.2
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 2.7e-06 55.8 43 51.2


User provided reference genes

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