Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 6.8e-78 293.9 145 100.0
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 5.2e-70 267.7 141 94.3
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 7.0e-67 257.3 129 98.4
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 5.2e-54 214.5 204 58.3
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 8.9e-54 213.8 207 59.4
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 1.5e-45 186.4 128 72.7
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 4.4e-45 184.9 207 51.7
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 7.6e-45 184.1 207 50.7
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 3.8e-44 181.8 125 72.0
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 5.6e-40 167.9 202 48.5
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 3.1e-38 162.2 112 70.5
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 4.0e-38 161.8 202 47.5
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 1.2e-37 160.2 118 66.1
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 7.6e-37 157.5 112 68.8
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 9.9e-37 157.1 128 63.3
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 2.2e-36 156.0 206 44.2
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 2.2e-28 129.4 206 40.3
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.1e-27 127.1 206 40.3
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 2.1e-26 122.9 206 38.3
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.3e-25 120.2 207 37.2
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 2.3e-25 119.4 131 48.1
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 1.5e-24 116.7 135 45.9
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 2.5e-24 115.9 205 36.6
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.5e-24 115.9 200 37.5
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 5.6e-24 114.8 118 49.2
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 9.6e-24 114.0 116 50.9
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.3e-23 113.6 206 35.9
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.3e-23 113.6 206 35.9
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 2.8e-23 112.5 123 49.6
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.1e-22 110.5 206 35.4
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.8e-22 109.8 193 36.8
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.8e-22 109.8 122 46.7
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 2.4e-22 109.4 116 45.7
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 3.1e-22 109.0 109 52.3
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.1e-22 109.0 116 49.1
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 3.1e-22 109.0 205 37.6
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 4.0e-22 108.6 205 35.1
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 4.0e-22 108.6 140 43.6
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 4.0e-22 108.6 132 45.5
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 4.0e-22 108.6 116 50.0
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 4.0e-22 108.6 148 43.2
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 5.3e-22 108.2 201 35.3
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 6.9e-22 107.8 124 45.2
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 6.9e-22 107.8 112 49.1
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 6.9e-22 107.8 116 46.6
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 6.9e-22 107.8 205 34.6
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.2e-21 107.1 116 48.3
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 2.0e-21 106.3 126 46.8
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 2.0e-21 106.3 140 42.9
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 2.0e-21 106.3 131 42.7
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 4.5e-21 105.1 116 49.1
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 1.0e-20 104.0 111 50.5
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 1.3e-20 103.6 178 39.9
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.3e-20 103.6 132 43.9
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 2.2e-20 102.8 111 50.5
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 2.2e-20 102.8 206 35.0
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 3.8e-20 102.1 112 49.1
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 6.5e-20 101.3 123 46.3
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 6.5e-20 101.3 119 46.2
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 6.5e-20 101.3 121 47.1
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 8.4e-20 100.9 112 45.5
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 8.4e-20 100.9 189 37.0
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 8.4e-20 100.9 108 50.0
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 1.1e-19 100.5 82 61.0
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 1.4e-19 100.1 120 44.2
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 2.5e-19 99.4 125 43.2
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.2e-19 99.0 144 41.7
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 3.2e-19 99.0 111 45.0
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 7.1e-19 97.8 187 35.8
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 9.3e-19 97.4 111 46.8
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 1.6e-18 96.7 200 35.5
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.6e-18 96.7 194 34.0
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 3.5e-18 95.5 109 51.4
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 7.9e-18 94.4 175 37.1
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 1.0e-17 94.0 108 47.2
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 1.0e-17 94.0 176 36.9
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 1.0e-17 94.0 121 43.0
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 1.3e-17 93.6 108 48.1
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 1.8e-17 93.2 187 35.3
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 3.0e-17 92.4 113 44.2
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 3.0e-17 92.4 117 42.7
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 3.9e-17 92.0 175 36.6
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 3.9e-17 92.0 176 36.4
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 5.1e-17 91.7 118 43.2
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 6.7e-17 91.3 108 44.4
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 6.7e-17 91.3 118 44.1
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 8.7e-17 90.9 110 47.3
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 1.1e-16 90.5 111 45.0
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 1.1e-16 90.5 115 45.2
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 1.5e-16 90.1 110 44.5
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 1.5e-16 90.1 107 45.8
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 1.5e-16 90.1 120 40.8
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.9e-16 89.7 175 36.0
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.9e-16 89.7 138 35.5
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 2.5e-16 89.4 132 40.9
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 2.5e-16 89.4 112 48.2
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 4.3e-16 88.6 110 43.6
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 5.7e-16 88.2 107 46.7
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 9.7e-16 87.4 121 41.3
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 9.7e-16 87.4 150 36.7
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 1.3e-15 87.0 107 44.9
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 1.6e-15 86.7 150 36.7
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.8e-15 85.9 116 44.8
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 6.3e-15 84.7 116 37.9
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 1.4e-14 83.6 107 40.2
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.8e-14 83.2 116 38.8
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 6.9e-14 81.3 125 40.0
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 1.5e-13 80.1 114 42.1
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 7.7e-13 77.8 41 95.1
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 1.0e-12 77.4 88 42.0
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 1.0e-12 77.4 131 37.4
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.2e-10 70.5 154 31.2
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.0e-09 65.9 136 29.4
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.0e-09 65.9 136 29.4
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 6.7e-09 64.7 168 31.5
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 1.1e-08 63.9 120 30.0
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.5e-08 63.5 107 36.4
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 2.0e-08 63.2 140 38.6
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 1.7e-07 60.1 72 38.9


User provided reference genes

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