Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G365067 Glycine max HOM05D005578 ORTHO05D006969 1.5e-127 459.5 235 100.0
Glyma.15G008200 Glycine max HOM05D005578 ORTHO05D006969 3.7e-110 401.7 244 87.7
Phvul.005G177500 Phaseolus vulgaris HOM05D005578 ORTHO05D006969 1.1e-109 400.2 241 86.7
VMungo1080G0492 Vigna mungo HOM05D005578 ORTHO05D006969 1.0e-107 393.7 238 85.7
Ca_12803_v3 Cicer arietinum L. HOM05D005578 ORTHO05D006969 3.5e-100 368.6 238 80.7
Ca_12815_v3 Cicer arietinum L. HOM05D005578 ORTHO05D006969 3.5e-100 368.6 238 80.7
Psat6g034120 Pisum sativum HOM05D005578 ORTHO05D006969 5.6e-98 361.3 238 78.2
Lj1g0014139 Lotus japonicus HOM05D005578 ORTHO05D006969 6.9e-96 354.4 236 77.5
Lj2g0024445 Lotus japonicus HOM05D005578 ORTHO05D006969 9.0e-96 354.0 236 78.0
Medtr1g008370 Medicago truncatula HOM05D005578 ORTHO05D006969 2.9e-94 349.0 239 76.2
Lalb_Chr10g0096771 Lupinus albus HOM05D005578 ORTHO05D006969 1.1e-93 347.1 233 76.8
arahy.Tifrunner.gnm1.ann1.22GNET Arachis hypogaea HOM05D005578 ORTHO05D006969 1.9e-93 346.3 239 75.7
arahy.Tifrunner.gnm1.ann1.SET2JR Arachis hypogaea HOM05D005578 ORTHO05D006969 1.9e-93 346.3 239 75.7
TPR.G12104 Trifolium pratense HOM05D005578 ORTHO05D006969 1.5e-90 336.7 235 73.6
ClCG07G015240 Citrullus lanatus HOM05D005578 ORTHO05D006969 3.8e-86 322.0 236 68.2
MD04G1048400 Malus domestica HOM05D005578 ORTHO05D006969 1.4e-85 320.1 236 71.2
Thecc.03G041600 Theobroma cacao HOM05D005578 ORTHO05D006969 1.9e-85 319.7 236 71.2
CiPaw.02G101100 Carya illinoinensis HOM05D005578 ORTHO05D006969 2.4e-85 319.3 239 70.7
Duzib084G0701 Durio zibethinus HOM05D005578 ORTHO05D006969 2.4e-85 319.3 236 72.0
CsaV3_4G002830 Cucumis sativus L. HOM05D005578 ORTHO05D006969 3.2e-85 318.9 236 67.8
Prupe.1G080200 Prunus persica HOM05D005578 ORTHO05D006969 3.2e-85 318.9 236 70.8
Gohir.A09G176200 Gossypium hirsutum HOM05D005578 ORTHO05D006969 4.2e-85 318.5 238 70.2
Manes.04G036900 Manihot esculenta HOM05D005578 ORTHO05D006969 4.2e-85 318.5 237 70.5
Gohir.D09G171900 Gossypium hirsutum HOM05D005578 ORTHO05D006969 9.3e-85 317.4 238 69.7
Gorai.006G193800 Gossypium raimondii HOM05D005578 ORTHO05D006969 1.2e-84 317.0 238 69.7
Dinv33195 Davidia involucrata HOM05D005578 ORTHO05D006969 1.6e-84 316.6 239 70.3
CANSAT78G2511 Cannabis sativa HOM05D005578 ORTHO05D006969 7.9e-84 314.3 233 70.4
GSVIVG01038127001 Vitis vinifera HOM05D005578 ORTHO05D006969 1.0e-83 313.9 238 70.2
QL10p054496 Quercus lobata HOM05D005578 ORTHO05D006969 1.8e-83 313.2 239 68.6
RcHm_v2.0_Chr4g0406211 Rosa chinensis HOM05D005578 ORTHO05D006969 3.9e-83 312.0 239 68.6
CANSAT35G1372 Cannabis sativa HOM05D005578 ORTHO05D006969 5.1e-83 311.6 233 69.1
QL10p053362 Quercus lobata HOM05D005578 ORTHO05D006969 8.7e-83 310.8 239 68.6
FAN22G0827 Fragaria x ananassa HOM05D005578 ORTHO05D006969 1.5e-82 310.1 237 68.4
COL.COLO4_38536 Corchorus olitorius HOM05D005578 ORTHO05D006969 2.5e-82 309.3 257 65.8
Hma1.2p1_0150F.1_g066670 Hydrangea macrophylla HOM05D005578 ORTHO05D006969 2.5e-82 309.3 236 67.8
FAN07G2607 Fragaria x ananassa HOM05D005578 ORTHO05D006969 3.3e-82 308.9 236 68.6
TWI63G0500 Tripterygium wilfordii HOM05D005578 ORTHO05D006969 5.6e-82 308.1 239 66.9
CSS0000228 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 7.4e-82 307.8 239 67.4
CSS0036062 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 7.4e-82 307.8 239 67.4
FAN12G1674 Fragaria x ananassa HOM05D005578 ORTHO05D006969 1.3e-81 307.0 236 68.2
FAN12G2406 Fragaria x ananassa HOM05D005578 ORTHO05D006969 1.3e-81 307.0 236 68.2
CSS0020752 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 1.6e-81 306.6 239 66.9
CSS0022855 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 1.6e-81 306.6 238 67.2
Sabra06G0097900 Salix brachista HOM05D005578 ORTHO05D006969 3.7e-81 305.4 236 68.2
Potri.006G123700 Populus trichocarpa HOM05D005578 ORTHO05D006969 1.1e-80 303.9 234 68.4
Actinidia27108 Actinidia chinensis HOM05D005578 ORTHO05D006969 4.0e-80 302.0 236 67.8
Eucgr.A00019 Eucalyptus grandis HOM05D005578 ORTHO05D006969 1.2e-79 300.4 235 66.8
Ciclev10020255m.g Citrus clementina HOM05D005578 ORTHO05D006969 4.5e-79 298.5 241 65.6
PGR083G2150 Punica granatum HOM05D005578 ORTHO05D006969 2.9e-78 295.8 238 65.1
Lj3A157G51 Lonicera japonica HOM05D005578 ORTHO05D006969 4.9e-78 295.0 241 66.0
CAN.G128.150 Capsicum annuum HOM05D005578 ORTHO05D006969 1.4e-77 293.5 234 66.2
Ah.01g024150 Amaranthus hybridus HOM05D005578 ORTHO05D006969 1.9e-77 293.1 239 63.2
PGSC0003DMG400028219 Solanum tuberosum HOM05D005578 ORTHO05D006969 5.5e-77 291.6 238 65.5
Atru.chr4.1387 Acer truncatum HOM05D005578 ORTHO05D006969 7.1e-77 291.2 241 65.1
vmacro00704 Vaccinium macrocarpon HOM05D005578 ORTHO05D006969 7.1e-77 291.2 239 65.3
Cpa.g.sc9.352 Carica papaya HOM05D005578 ORTHO05D006969 9.3e-77 290.8 238 65.1
Sopen10g032050 Solanum pennellii HOM05D005578 ORTHO05D006969 9.3e-77 290.8 234 66.2
Nitab4.5_0000387g0110 Nicotiana tabacum HOM05D005578 ORTHO05D006969 1.2e-76 290.4 235 66.0
Cc00_g24800 Coffea canephora HOM05D005578 ORTHO05D006969 2.1e-76 289.7 235 65.1
TAR365G0588 Trochodendron aralioides HOM05D005578 ORTHO05D006969 2.1e-76 289.7 242 65.7
Solyc10g081540.2 Solanum lycopersicum HOM05D005578 ORTHO05D006969 3.5e-76 288.9 234 65.8
Peaxi162Scf00568g00519 Petunia axillaris HOM05D005578 ORTHO05D006969 1.0e-75 287.3 234 64.5
Cc03_g13760 Coffea canephora HOM05D005578 ORTHO05D006969 1.8e-75 286.6 235 65.1
MBI08_g25556_MAGBIO Magnolia biondii HOM05D005578 ORTHO05D006969 1.8e-75 286.6 239 65.3
Hund00394 Selenicereus undatus HOM05D005578 ORTHO05D006969 1.8e-75 286.6 232 62.1
Sc18g0007160 Simmondsia chinensis HOM05D005578 ORTHO05D006969 2.3e-75 286.2 238 63.4
EL10Ac9g22122 Beta vulgaris HOM05D005578 ORTHO05D006969 9.6e-74 280.8 238 59.7
THA.LOC104802321 Tarenaya hassleriana HOM05D005578 ORTHO05D006969 9.6e-74 280.8 246 60.2
Rhsim09G0010700 Rhododendron simsii HOM05D005578 ORTHO05D006969 1.3e-73 280.4 232 65.9
Phvul.L003146 Phaseolus vulgaris HOM05D005578 ORTHO05D006969 2.1e-73 279.6 180 81.7
SalBow4G1988 Salvia bowleyana HOM05D005578 ORTHO05D006969 1.1e-72 277.3 236 61.9
Migut.N01914 Erythranthe guttata HOM05D005578 ORTHO05D006969 4.1e-72 275.4 239 60.7
SalBow4G1580 Salvia bowleyana HOM05D005578 ORTHO05D006969 4.1e-72 275.4 236 61.4
AUR62027084 Chenopodium quinoa HOM05D005578 ORTHO05D006969 1.2e-71 273.9 237 60.8
AUR62030923 Chenopodium quinoa HOM05D005578 ORTHO05D006969 3.4e-71 272.3 237 59.9
Aqoxy5G03977 Aquilegia oxysepala HOM05D005578 ORTHO05D006969 1.7e-70 270.0 231 61.9
Nn3g18569 Nelumbo nucifera HOM05D005578 ORTHO05D006969 6.5e-70 268.1 240 60.4
AL5G41540 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 1.1e-69 267.3 241 58.1
BcaC07g40493 Brassica carinata HOM05D005578 ORTHO05D006969 1.1e-69 267.3 240 59.6
C08p34620 Brassica napus HOM05D005578 ORTHO05D006969 1.1e-69 267.3 240 59.6
BolC8t51064H Brassica oleracea HOM05D005578 ORTHO05D006969 1.1e-69 267.3 240 59.6
A09p51890 Brassica napus HOM05D005578 ORTHO05D006969 1.4e-69 266.9 240 59.6
BraA09t40625Z Brassica rapa HOM05D005578 ORTHO05D006969 1.4e-69 266.9 240 59.6
SHI16665 Sapria himalayana HOM05D005578 ORTHO05D006969 1.4e-69 266.9 235 60.4
MSTRG.28018 Avicennia marina HOM05D005578 ORTHO05D006969 3.2e-69 265.8 235 59.1
AT3G59630 Arabidopsis thaliana HOM05D005578 ORTHO05D006969 4.2e-69 265.4 241 58.1
Sp5g03550 Schrenkiella parvula HOM05D005578 ORTHO05D006969 4.2e-69 265.4 242 58.7
BcaC07g40470 Brassica carinata HOM05D005578 ORTHO05D006969 1.2e-68 263.8 244 58.6
HanXRQChr02g0059791 Helianthus annuus HOM05D005578 ORTHO05D006969 1.2e-68 263.8 243 56.4
Thhalv10028620m.g Eutrema salsugineum HOM05D005578 ORTHO05D006969 1.6e-68 263.5 239 57.3
PSO017G0139 Papaver somniferum HOM05D005578 ORTHO05D006969 4.6e-68 261.9 242 57.0
CARHR220950 Cardamine hirsuta HOM05D005578 ORTHO05D006969 6.1e-68 261.5 243 56.8
ECA232G2403 Erigeron canadensis HOM05D005578 ORTHO05D006969 7.9e-68 261.2 240 57.5
Os11g0265600 Oryza sativa ssp. japonica HOM05D005578 ORTHO05D006969 1.3e-67 260.4 211 61.6
PSO675G5381 Papaver somniferum HOM05D005578 ORTHO05D006969 1.8e-67 260.0 241 58.1
CDE08G0459 Ceratophyllum demersum HOM05D005578 ORTHO05D006969 5.1e-67 258.5 235 59.6
PSO478G3531 Papaver somniferum HOM05D005578 ORTHO05D006969 1.1e-66 257.3 242 55.0
Zm00001eb064030 Zea mays HOM05D005578 ORTHO05D006969 3.3e-66 255.8 209 61.7
Carub.0005s2633 Capsella rubella HOM05D005578 ORTHO05D006969 5.7e-66 255.0 241 55.2
Lsat_1_v5_gn_2_34381 Lactuca sativa HOM05D005578 ORTHO05D006969 2.2e-65 253.1 226 59.3
Aa31LG10G13930 Aethionema arabicum HOM05D005578 ORTHO05D006969 2.8e-65 252.7 272 51.8
SEGI_35608 Sequoiadendron giganteum HOM05D005578 ORTHO05D006969 1.4e-64 250.4 238 55.0
DCAR_028436 Daucus carota HOM05D005578 ORTHO05D006969 9.0e-64 247.7 212 63.2
Haze_01375 Corylus avellana HOM05D005578 ORTHO05D006969 4.5e-63 245.4 318 48.1
HPP92_007603 Vanilla planifolia HOM05D005578 ORTHO05D006969 7.9e-60 234.6 242 55.0
AL5G41610 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 1.1e-53 214.2 191 57.6
Thhalv10005976m.g Eutrema salsugineum HOM05D005578 ORTHO05D006969 3.9e-51 205.7 170 61.2
SGA_v2.0_scaffold81G26092 Striga asiatica HOM05D005578 ORTHO05D006969 3.3e-50 202.6 311 40.5
Mapoly0065s0036 Marchantia polymorpha HOM05D005578 ORTHO05D006969 2.6e-47 193.0 255 46.3
unitig_21.g20051 Utricularia gibba HOM05D005578 ORTHO05D006969 3.5e-47 192.6 215 50.2
AagrBONN_evm.TU.Sc2ySwM_117.2191 Anthoceros agrestis HOM05D005578 ORTHO05D006969 7.2e-45 184.9 276 40.9
AL5G41640 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 6.1e-44 181.8 165 57.0
Pp3c8_4090 Physcomitrium patens HOM05D005578 ORTHO05D006969 8.2e-41 171.4 218 49.1
FvH4_4g10580 Fragaria vesca HOM05D005578 ORTHO05D006969 1.2e-39 167.5 113 76.1
MELO3C017758.2 Cucumis melo HOM05D005578 ORTHO05D006969 5.9e-39 165.2 112 75.0
Nitab4.5_0002087g0070 Nicotiana tabacum HOM05D005578 ORTHO05D006969 1.7e-38 163.7 112 75.0
SMO203G0280 Selaginella moellendorffii HOM05D005578 ORTHO05D006969 8.5e-38 161.4 125 58.4
Cc00_g21820 Coffea canephora HOM05D005578 ORTHO05D006969 5.5e-37 158.7 110 72.7
PRCOL_00000644 Prasinoderma coloniale HOM05D005578 ORTHO05D006969 1.2e-28 131.0 253 36.8
CBR_g26331 Chara braunii HOM05D005578 ORTHO05D006969 4.0e-27 125.9 257 37.7
MCO11G524 Micromonas commoda HOM05D005578 ORTHO05D006969 3.4e-26 122.9 263 34.6
Cre08.g376150 Chlamydomonas reinhardtii HOM05D005578 ORTHO05D006969 2.4e-24 116.7 240 37.5
TPR.G17732 Trifolium pratense HOM05D005578 ORTHO05D006969 1.8e-19 100.5 82 61.0
Cfa025460 Carpinus fangiana HOM05D005578 ORTHO05D006969 1.4e-16 90.9 242 29.8
TPR.G2494 Trifolium pratense HOM05D005578 ORTHO05D006969 4.6e-15 85.9 59 71.2
Hma1.2p1_0150F.1_g066660 Hydrangea macrophylla HOM05D005578 ORTHO05D006969 8.6e-14 81.6 78 55.1
Psat6g092640 Pisum sativum HOM05D005578 ORTHO05D006969 3.2e-08 63.2 36 77.8


User provided reference genes

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