Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G365000 Glycine max HOM05D002758 ORTHO05D002885 1.6e-53 212.6 113 100.0
Glyma.15G008300 Glycine max HOM05D002758 ORTHO05D002885 4.5e-37 157.9 117 79.5
VMungo1080G1568 Vigna mungo HOM05D002758 ORTHO05D002885 2.3e-33 145.6 121 73.6
Phvul.005G177400 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 1.1e-30 136.7 121 71.1
Glyma.08G211800 Glycine max HOM05D002758 ORTHO05D002885 5.2e-25 117.9 139 55.4
Glyma.07G031000 Glycine max HOM05D002758 ORTHO05D002885 2.4e-22 109.0 139 52.5
Medtr4g010530 Medicago truncatula HOM05D002758 ORTHO05D002885 2.7e-21 105.5 130 54.6
Phvul.010G155100 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 3.5e-21 105.1 133 55.6
VMungo0331G0585 Vigna mungo HOM05D002758 ORTHO05D002885 3.9e-20 101.7 132 56.1
Lalb_Chr25g0279401 Lupinus albus HOM05D002758 ORTHO05D002885 1.9e-19 99.4 128 56.2
Psat5g302120 Pisum sativum HOM05D002758 ORTHO05D002885 3.3e-19 98.6 136 50.7
TPR.G37180 Trifolium pratense HOM05D002758 ORTHO05D002885 2.8e-18 95.5 139 48.2
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.8e-17 92.8 132 49.2
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 1.8e-17 92.8 127 49.6
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 1.8e-17 92.8 125 46.4
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 2.3e-17 92.4 113 52.2
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.3e-17 92.4 113 52.2
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.3e-17 92.4 111 52.3
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 2.3e-17 92.4 113 52.2
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 2.0e-16 89.4 125 51.2
TPR.G38648 Trifolium pratense HOM05D002758 ORTHO05D002885 2.0e-16 89.4 136 45.6
Medtr2g103750 Medicago truncatula HOM05D002758 ORTHO05D002885 5.8e-16 87.8 136 47.8
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 5.8e-16 87.8 123 52.8
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 1.7e-15 86.3 127 47.2
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 1.7e-15 86.3 133 48.9
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 2.9e-15 85.5 122 46.7
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 1.4e-14 83.2 126 46.0
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 1.4e-14 83.2 116 50.0
Lj3g0013801 Lotus japonicus HOM05D002758 ORTHO05D002885 2.4e-14 82.4 136 44.9
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 3.2e-14 82.0 136 42.6
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 5.4e-14 81.3 128 47.7
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 5.4e-14 81.3 133 48.1
arahy.Tifrunner.gnm1.ann1.66WDLV Arachis hypogaea HOM05D002758 ORTHO05D002885 9.2e-14 80.5 132 50.8
arahy.Tifrunner.gnm1.ann1.FSE12S Arachis hypogaea HOM05D002758 ORTHO05D002885 9.2e-14 80.5 131 48.9
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 9.2e-14 80.5 128 49.2
Psat7g255440 Pisum sativum HOM05D002758 ORTHO05D002885 9.2e-14 80.5 139 47.5
arahy.Tifrunner.gnm1.ann1.3WRP69 Arachis hypogaea HOM05D002758 ORTHO05D002885 1.2e-13 80.1 131 48.1
arahy.Tifrunner.gnm1.ann1.A8WRUN Arachis hypogaea HOM05D002758 ORTHO05D002885 1.2e-13 80.1 131 48.1
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 2.0e-13 79.3 130 45.4
Lalb_Chr10g0096781 Lupinus albus HOM05D002758 ORTHO05D002885 2.0e-13 79.3 131 45.8
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 2.0e-13 79.3 134 47.8
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 2.7e-13 79.0 126 44.4
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 2.7e-13 79.0 126 43.7
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 2.7e-13 79.0 129 42.6
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 6.0e-13 77.8 128 48.4
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 1.0e-12 77.0 130 43.1
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 1.0e-12 77.0 130 43.1
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 1.7e-12 76.3 130 44.6
Lalb_Chr01g0012401 Lupinus albus HOM05D002758 ORTHO05D002885 1.7e-12 76.3 126 46.8
Lj3g0008770 Lotus japonicus HOM05D002758 ORTHO05D002885 2.3e-12 75.9 145 42.1
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 2.3e-12 75.9 130 41.5
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.0e-12 75.5 126 46.8
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.0e-12 75.5 126 46.8
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 3.0e-12 75.5 121 47.1
arahy.Tifrunner.gnm1.ann1.R8JN66 Arachis hypogaea HOM05D002758 ORTHO05D002885 3.9e-12 75.1 134 47.0
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 8.6e-12 73.9 133 41.4
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 8.6e-12 73.9 135 41.5
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 8.6e-12 73.9 126 46.0
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 1.1e-11 73.6 129 40.3
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 1.5e-11 73.2 136 42.6
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 1.5e-11 73.2 129 43.4
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.9e-11 72.8 135 42.2
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 2.5e-11 72.4 136 41.9
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 2.5e-11 72.4 139 40.3
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 4.3e-11 71.6 121 43.0
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 5.6e-11 71.2 130 45.4
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 7.3e-11 70.9 130 44.6
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 7.3e-11 70.9 133 42.1
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 7.3e-11 70.9 134 43.3
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 1.2e-10 70.1 136 43.4
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 1.2e-10 70.1 127 44.9
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 1.6e-10 69.7 135 43.7
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 1.6e-10 69.7 137 42.3
FAN09G3789 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.6e-10 69.7 96 49.0
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 2.1e-10 69.3 141 41.8
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 2.8e-10 68.9 139 41.7
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 4.7e-10 68.2 131 42.7
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 4.7e-10 68.2 131 42.7
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 8.1e-10 67.4 139 41.0
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 8.1e-10 67.4 139 41.0
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 8.1e-10 67.4 139 41.0
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 8.1e-10 67.4 129 42.6
Gohir.A07G036200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 8.1e-10 67.4 134 42.5
Hund00526 Selenicereus undatus HOM05D002758 ORTHO05D002885 8.1e-10 67.4 131 40.5
FAN19G2709 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.1e-09 67.0 137 42.3
Hma1.2p1_1962F.1_g309250 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 1.1e-09 67.0 132 40.9
FvH4_1g03160 Fragaria vesca HOM05D002758 ORTHO05D002885 1.4e-09 66.6 136 42.6
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 1.8e-09 66.2 131 43.5
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 1.8e-09 66.2 134 41.8
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 1.8e-09 66.2 134 41.8
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 1.8e-09 66.2 134 41.8
FAN23G2585 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.8e-09 66.2 137 42.3
Hund06567 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.3e-09 65.9 133 40.6
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 3.1e-09 65.5 134 41.8
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.1e-09 65.5 129 42.6
Sc10g0005850 Simmondsia chinensis HOM05D002758 ORTHO05D002885 3.1e-09 65.5 136 39.0
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 5.2e-09 64.7 131 46.6
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 5.2e-09 64.7 131 41.2
Rhsim01G0069000 Rhododendron simsii HOM05D002758 ORTHO05D002885 5.2e-09 64.7 143 37.8
RcHm_v2.0_Chr2g0088291 Rosa chinensis HOM05D002758 ORTHO05D002885 6.8e-09 64.3 137 42.3
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 8.9e-09 63.9 128 39.8
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 1.2e-08 63.5 129 42.6
Gorai.001G042500 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.2e-08 63.5 135 43.7
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 1.5e-08 63.2 125 41.6
FAN26G2290 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.5e-08 63.2 137 40.9
Lalb_Chr13g0301821 Lupinus albus HOM05D002758 ORTHO05D002885 1.5e-08 63.2 121 42.1
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 1.5e-08 63.2 115 42.6
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 2.0e-08 62.8 134 38.1
AUR62011138 Chenopodium quinoa HOM05D002758 ORTHO05D002885 2.0e-08 62.8 125 44.0
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 2.6e-08 62.4 119 39.5
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 3.4e-08 62.0 131 39.7
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 3.4e-08 62.0 126 42.1
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 4.4e-08 61.6 130 40.0
Lalb_Chr07g0178991 Lupinus albus HOM05D002758 ORTHO05D002885 4.4e-08 61.6 116 39.7
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 5.8e-08 61.2 131 42.7
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 7.5e-08 60.8 130 39.2
Medtr4g114600 Medicago truncatula HOM05D002758 ORTHO05D002885 7.5e-08 60.8 139 39.6
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 7.5e-08 60.8 134 40.3
Oeu027807.1 Olea europaea HOM05D002758 ORTHO05D002885 9.9e-08 60.5 128 42.2
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 1.3e-07 60.1 132 39.4
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 1.3e-07 60.1 131 40.5
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 1.7e-07 59.7 132 40.2
Prupe.7G243900 Prunus persica HOM05D002758 ORTHO05D002885 1.7e-07 59.7 147 36.7
MSTRG.11135 Avicennia marina HOM05D002758 ORTHO05D002885 2.9e-07 58.9 123 42.3
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 2.9e-07 58.9 141 37.6
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 3.7e-07 58.5 129 41.9
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 3.7e-07 58.5 129 41.1
Gohir.D07G040200 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.7e-07 58.5 134 40.3
Nitab4.5_0000373g0020 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.7e-07 58.5 126 39.7
Gohir.A05G016000 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.9e-07 58.2 129 42.6
Gohir.D05G017100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 4.9e-07 58.2 129 42.6
Gorai.009G017300 Gossypium raimondii HOM05D002758 ORTHO05D002885 4.9e-07 58.2 129 42.6
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 8.3e-07 57.4 129 38.8
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 8.3e-07 57.4 130 36.2
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.1e-06 57.0 127 40.2
Carub.0001s4153 Capsella rubella HOM05D002758 ORTHO05D002885 1.1e-06 57.0 129 36.4
MBI04_g24597_MAGBIO Magnolia biondii HOM05D002758 ORTHO05D002885 1.1e-06 57.0 124 39.5
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 1.1e-06 57.0 135 40.0
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.4e-06 56.6 125 41.6
Glyma.17G114300 Glycine max HOM05D002758 ORTHO05D002885 1.9e-06 56.2 129 37.2
VMungo1215G1272 Vigna mungo HOM05D002758 ORTHO05D002885 2.4e-06 55.8 119 37.0
C06p07990 Brassica napus HOM05D002758 ORTHO05D002885 3.2e-06 55.5 143 37.1
Ca_21675_v3 Cicer arietinum L. HOM05D002758 ORTHO05D002885 3.2e-06 55.5 143 36.4
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 3.2e-06 55.5 127 39.4
TWI32G0299 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 3.2e-06 55.5 120 40.8
MD15G1172200 Malus domestica HOM05D002758 ORTHO05D002885 5.4e-06 54.7 125 38.4
PSO210G4958 Papaver somniferum HOM05D002758 ORTHO05D002885 7.1e-06 54.3 134 35.1
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 7.1e-06 54.3 129 39.5


User provided reference genes

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