Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G364500 Glycine max HOM05D006819 ORTHO05D008763 2.6e-174 616.7 826 100.0
Glyma.15G009300 Glycine max HOM05D006819 ORTHO05D008763 5.0e-141 506.1 810 95.6
Phvul.005G176600 Phaseolus vulgaris HOM05D006819 ORTHO05D008763 3.8e-125 453.4 824 90.5
VMungo1080G1389 Vigna mungo HOM05D006819 ORTHO05D008763 6.3e-120 436.0 820 90.2
Lj3g0013909 Lotus japonicus HOM05D006819 ORTHO05D008763 4.0e-114 416.8 823 86.8
Lalb_Chr22g0350931 Lupinus albus HOM05D006819 ORTHO05D008763 4.0e-106 390.2 829 84.3
arahy.Tifrunner.gnm1.ann1.6PYW3K Arachis hypogaea HOM05D006819 ORTHO05D008763 3.7e-96 357.1 828 82.5
arahy.Tifrunner.gnm1.ann1.6R2JPG Arachis hypogaea HOM05D006819 ORTHO05D008763 6.3e-96 356.3 828 82.6
arahy.Tifrunner.gnm1.ann1.GQ0MHW Arachis hypogaea HOM05D006819 ORTHO05D008763 6.3e-96 356.3 828 82.6
TPR.G37179 Trifolium pratense HOM05D006819 ORTHO05D008763 5.9e-94 349.7 824 83.4
Ca_20110_v3 Cicer arietinum L. HOM05D006819 ORTHO05D008763 4.3e-92 343.6 869 79.6
arahy.Tifrunner.gnm1.ann1.UYKR6J Arachis hypogaea HOM05D006819 ORTHO05D008763 7.8e-86 322.8 795 83.1
Medtr2g103520 Medicago truncatula HOM05D006819 ORTHO05D008763 6.2e-83 313.2 817 81.4
Psat5g301600 Pisum sativum HOM05D006819 ORTHO05D008763 3.5e-78 297.4 814 73.2
Prupe.3G082900 Prunus persica HOM05D006819 ORTHO05D008763 3.0e-69 267.7 249 54.2
Cfa001984 Carpinus fangiana HOM05D006819 ORTHO05D008763 4.3e-68 263.8 823 77.9
Haze_16531 Corylus avellana HOM05D006819 ORTHO05D008763 4.3e-68 263.8 821 77.7
QL05p028543 Quercus lobata HOM05D006819 ORTHO05D008763 4.7e-67 260.4 250 54.4
Dinv30584 Davidia involucrata HOM05D006819 ORTHO05D008763 2.4e-66 258.1 251 52.6
CiPaw.02G155800 Carya illinoinensis HOM05D006819 ORTHO05D008763 2.2e-64 251.5 822 76.4
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 3.8e-64 250.8 251 49.8
CsaV3_4G001460 Cucumis sativus L. HOM05D006819 ORTHO05D008763 1.6e-62 245.4 252 50.8
Lj5C69T16 Lonicera japonica HOM05D006819 ORTHO05D008763 2.1e-62 245.0 254 52.4
MD17G1208200 Malus domestica HOM05D006819 ORTHO05D008763 7.8e-62 243.0 254 49.6
Aqoxy7G03720 Aquilegia oxysepala HOM05D006819 ORTHO05D008763 1.0e-61 242.7 253 47.0
MELO3C017894.2 Cucumis melo HOM05D006819 ORTHO05D008763 1.7e-61 241.9 252 50.4
FvH4_6g30030 Fragaria vesca HOM05D006819 ORTHO05D008763 2.3e-61 241.5 253 51.4
FAN14G2986 Fragaria x ananassa HOM05D006819 ORTHO05D008763 2.3e-61 241.5 253 51.4
ClCG07G012740 Citrullus lanatus HOM05D006819 ORTHO05D008763 3.0e-61 241.1 252 50.4
CSS0002572 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 2.5e-60 238.0 220 51.8
RcHm_v2.0_Chr2g0136061 Rosa chinensis HOM05D006819 ORTHO05D008763 3.3e-60 237.7 251 49.4
Sed0026792 Sechium edule HOM05D006819 ORTHO05D008763 3.3e-60 237.7 248 48.0
Duzib235G1541 Durio zibethinus HOM05D006819 ORTHO05D008763 4.3e-60 237.3 251 48.6
FAN05G3290 Fragaria x ananassa HOM05D006819 ORTHO05D008763 9.6e-60 236.1 251 50.2
CSS0026240 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 1.3e-59 235.7 220 51.4
Rhsim08G0214900 Rhododendron simsii HOM05D006819 ORTHO05D008763 6.2e-59 233.4 252 48.0
Rhsim04G0187400 Rhododendron simsii HOM05D006819 ORTHO05D008763 8.1e-59 233.0 252 47.6
TAR383G0223 Trochodendron aralioides HOM05D006819 ORTHO05D008763 8.1e-59 233.0 250 47.6
COL.COLO4_12924 Corchorus olitorius HOM05D006819 ORTHO05D008763 1.8e-58 231.9 251 45.8
vmacro19477 Vaccinium macrocarpon HOM05D006819 ORTHO05D008763 2.4e-58 231.5 251 45.8
FAN09G2760 Fragaria x ananassa HOM05D006819 ORTHO05D008763 5.3e-58 230.3 251 49.0
Lsat_1_v5_gn_4_106101 Lactuca sativa HOM05D006819 ORTHO05D008763 1.5e-57 228.8 247 47.0
Nitab4.5_0010254g0010 Nicotiana tabacum HOM05D006819 ORTHO05D008763 3.4e-57 227.6 255 47.8
Psat0s2501g0040 Pisum sativum HOM05D006819 ORTHO05D008763 2.2e-56 224.9 158 72.2
Psat0s2501g0080 Pisum sativum HOM05D006819 ORTHO05D008763 2.2e-56 224.9 158 72.2
Nn8g39431 Nelumbo nucifera HOM05D006819 ORTHO05D008763 2.9e-56 224.6 253 48.6
Ciclev10024942m.g Citrus clementina HOM05D006819 ORTHO05D008763 4.9e-56 223.8 254 49.6
AUR62016357 Chenopodium quinoa HOM05D006819 ORTHO05D008763 6.4e-56 223.4 248 47.2
Atru.chr1.3043 Acer truncatum HOM05D006819 ORTHO05D008763 8.4e-56 223.0 255 48.2
PGR031G3623 Punica granatum HOM05D006819 ORTHO05D008763 4.2e-55 220.7 250 44.4
GSVIVG01017297001 Vitis vinifera HOM05D006819 ORTHO05D008763 4.2e-55 220.7 248 46.4
Cpa.g.sc10.236 Carica papaya HOM05D006819 ORTHO05D008763 9.3e-55 219.5 251 45.4
PGSC0003DMG400000632 Solanum tuberosum HOM05D006819 ORTHO05D008763 1.6e-54 218.8 254 46.9
Nitab4.5_0001764g0060 Nicotiana tabacum HOM05D006819 ORTHO05D008763 2.1e-54 218.4 255 46.3
AUR62011538 Chenopodium quinoa HOM05D006819 ORTHO05D008763 4.6e-54 217.2 253 45.5
Hund00538 Selenicereus undatus HOM05D006819 ORTHO05D008763 1.0e-53 216.1 250 46.0
DCAR_025499 Daucus carota HOM05D006819 ORTHO05D008763 1.3e-53 215.7 253 45.8
Solyc03g116560.1 Solanum lycopersicum HOM05D006819 ORTHO05D008763 2.3e-53 214.9 255 45.9
Eucgr.J03057 Eucalyptus grandis HOM05D006819 ORTHO05D008763 5.1e-53 213.8 249 46.2
Cc04_g04190 Coffea canephora HOM05D006819 ORTHO05D008763 1.9e-52 211.8 249 44.6
Sopen03g035470 Solanum pennellii HOM05D006819 ORTHO05D008763 3.3e-52 211.1 255 45.1
Migut.D01062 Erythranthe guttata HOM05D006819 ORTHO05D008763 7.3e-52 209.9 254 45.7
HanXRQChr09g0274981 Helianthus annuus HOM05D006819 ORTHO05D008763 6.2e-51 206.8 247 42.9
SalBow2G3436 Salvia bowleyana HOM05D006819 ORTHO05D008763 6.2e-51 206.8 252 44.8
TWI18G0691 Tripterygium wilfordii HOM05D006819 ORTHO05D008763 6.2e-51 206.8 247 45.7
EL10Ac9g21918 Beta vulgaris HOM05D006819 ORTHO05D008763 1.1e-50 206.1 248 44.0
CAN.G407.98 Capsicum annuum HOM05D006819 ORTHO05D008763 1.1e-50 206.1 254 44.5
Potri.001G139200 Populus trichocarpa HOM05D006819 ORTHO05D008763 1.1e-50 206.1 250 46.8
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 1.1e-50 206.1 254 44.9
AT1G52620 Arabidopsis thaliana HOM05D006819 ORTHO05D008763 1.4e-50 205.7 253 44.7
THA.LOC104815536 Tarenaya hassleriana HOM05D006819 ORTHO05D008763 2.6e-49 201.4 246 44.3
Carub.0001s4161 Capsella rubella HOM05D006819 ORTHO05D008763 4.5e-49 200.7 248 44.8
ECA232G0226 Erigeron canadensis HOM05D006819 ORTHO05D008763 3.8e-48 197.6 250 40.0
AL1G60900 Arabidopsis lyrata HOM05D006819 ORTHO05D008763 6.4e-48 196.8 248 44.0
Sp1g39170 Schrenkiella parvula HOM05D006819 ORTHO05D008763 6.4e-48 196.8 248 43.1
Aa31LG10G2400 Aethionema arabicum HOM05D006819 ORTHO05D008763 1.4e-47 195.7 251 45.4
SGA_v2.0_scaffold16G07604 Striga asiatica HOM05D006819 ORTHO05D008763 4.2e-47 194.1 249 42.6
Sc10g0005770 Simmondsia chinensis HOM05D006819 ORTHO05D008763 1.6e-46 192.2 247 42.1
Sabra01G0108200 Salix brachista HOM05D006819 ORTHO05D008763 2.1e-46 191.8 244 45.5
Gorai.011G068600 Gossypium raimondii HOM05D006819 ORTHO05D008763 4.6e-46 190.7 223 44.8
Gohir.D10G064600 Gossypium hirsutum HOM05D006819 ORTHO05D008763 6.0e-46 190.3 223 44.8
PSO210G6668 Papaver somniferum HOM05D006819 ORTHO05D008763 2.3e-45 188.3 256 42.6
BraA06t23391Z Brassica rapa HOM05D006819 ORTHO05D008763 1.1e-44 186.0 248 41.9
A06p01730 Brassica napus HOM05D006819 ORTHO05D008763 1.5e-44 185.7 248 41.5
CDE02G2030 Ceratophyllum demersum HOM05D006819 ORTHO05D008763 2.8e-43 181.4 247 40.1
PSO210G0638 Papaver somniferum HOM05D006819 ORTHO05D008763 2.8e-43 181.4 253 41.1
C06p08050 Brassica napus HOM05D006819 ORTHO05D008763 1.8e-42 178.7 249 41.8
BolC6t35888H Brassica oleracea HOM05D006819 ORTHO05D008763 1.8e-42 178.7 249 41.8
Peaxi162Scf00332g00075 Petunia axillaris HOM05D006819 ORTHO05D008763 1.8e-42 178.7 219 43.8
BcaC08g43437 Brassica carinata HOM05D006819 ORTHO05D008763 6.9e-42 176.8 249 41.4
Manes.11G054300 Manihot esculenta HOM05D006819 ORTHO05D008763 1.3e-40 172.6 216 46.3
CARHR042740 Cardamine hirsuta HOM05D006819 ORTHO05D008763 2.9e-40 171.4 225 43.6
SHI20606 Sapria himalayana HOM05D006819 ORTHO05D008763 8.2e-35 153.3 222 39.2
Thhalv10011244m.g Eutrema salsugineum HOM05D006819 ORTHO05D008763 5.8e-33 147.1 221 38.0
Ah.01g020740 Amaranthus hybridus HOM05D006819 ORTHO05D008763 1.4e-31 142.5 203 40.4
Actinidia15785 Actinidia chinensis HOM05D006819 ORTHO05D008763 3.3e-28 131.3 117 57.3
Thecc.06G069300 Theobroma cacao HOM05D006819 ORTHO05D008763 2.2e-27 128.6 141 49.6
ATR0322G052 Amborella trichopoda HOM05D006819 ORTHO05D008763 2.4e-26 125.2 140 44.3
Sc25g0002730 Simmondsia chinensis HOM05D006819 ORTHO05D008763 5.9e-25 120.6 197 38.1
Gohir.A10G062900 Gossypium hirsutum HOM05D006819 ORTHO05D008763 1.0e-24 119.8 156 44.9
SalBow2G3112 Salvia bowleyana HOM05D006819 ORTHO05D008763 7.2e-23 113.6 147 40.1
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 1.6e-22 112.5 228 32.0
Zm00001eb196310 Zea mays HOM05D006819 ORTHO05D008763 6.1e-22 110.5 259 30.5
Oeu015243.5 Olea europaea HOM05D006819 ORTHO05D008763 7.9e-22 110.2 127 43.3
Atru.chr4.3032 Acer truncatum HOM05D006819 ORTHO05D008763 8.5e-16 90.1 111 41.4
Oeu026322.1 Olea europaea HOM05D006819 ORTHO05D008763 1.4e-15 89.4 98 46.9
FAN02G4037 Fragaria x ananassa HOM05D006819 ORTHO05D008763 3.9e-13 81.3 51 68.6
HPP92_002305 Vanilla planifolia HOM05D008254 ORTHO05D010423 3.9e-13 81.3 151 33.1
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 1.6e-09 69.3 192 26.6
TAR623G1671 Trochodendron aralioides HOM05D006819 ORTHO05D026583 2.2e-08 65.5 217 26.7
Thecc.01G004300 Theobroma cacao HOM05D006556 ORTHO05D008146 5.0e-08 64.3 236 23.3
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 1.5e-07 62.8 193 24.9
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 7.2e-07 60.5 209 23.0
SGA_v2.0_scaffold163G37988 Striga asiatica HOM05D006429 ORTHO05D008173 9.4e-07 60.1 218 24.8
ATR0794G139 Amborella trichopoda HOM05D007155 ORTHO05D003034 1.2e-06 59.7 137 26.3
Duzib147G0761 Durio zibethinus HOM05D006556 ORTHO05D008146 1.2e-06 59.7 235 23.8
MBI05_g33300_MAGBIO Magnolia biondii HOM05D006556 ORTHO05D008146 1.6e-06 59.3 187 24.6
PSO210G4907 Papaver somniferum HOM05D006556 ORTHO05D008146 1.6e-06 59.3 186 23.7
ATR0807G010 Amborella trichopoda HOM05D006556 ORTHO05D008146 3.6e-06 58.2 186 23.7
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 3.6e-06 58.2 99 35.4
CAN.G273.13 Capsicum annuum HOM05D000004 ORTHO05D000002 4.7e-06 57.8 108 29.6
CDE04G0400 Ceratophyllum demersum HOM05D007085 ORTHO05D008828 4.7e-06 57.8 193 23.3
Lj2g0027972 Lotus japonicus HOM05D006556 ORTHO05D008146 4.7e-06 57.8 189 23.3
Sabra05G0084800 Salix brachista HOM05D006556 ORTHO05D008146 4.7e-06 57.8 186 24.7
TWI09G0542 Tripterygium wilfordii HOM05D006556 ORTHO05D008146 4.7e-06 57.8 186 24.2
Duzib168G1420 Durio zibethinus HOM05D007251 ORTHO05D009266 6.1e-06 57.4 167 28.1
DCAR_014305 Daucus carota HOM05D000534 ORTHO05D008146 8.0e-06 57.0 186 22.6
Gohir.D04G192300 Gossypium hirsutum HOM05D006556 ORTHO05D008146 8.0e-06 57.0 186 23.7
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 8.0e-06 57.0 236 23.7


User provided reference genes

Program Settings