Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G364100 Glycine max HOM05D007863 ORTHO05D009265 9.8e-37 156.4 84 100.0
Glyma.15G009600 Glycine max HOM05D007863 ORTHO05D009265 1.2e-21 106.3 94 74.5
arahy.Tifrunner.gnm1.ann1.JQ3RYK Arachis hypogaea HOM05D007863 ORTHO05D009265 1.7e-12 75.9 87 56.3
Lj3g0006922 Lotus japonicus HOM05D007863 ORTHO05D009265 2.2e-12 75.5 71 62.0
TPR.G38680 Trifolium pratense HOM05D007863 ORTHO05D009265 6.4e-12 73.9 96 52.1
Medtr4g011030 Medicago truncatula HOM05D007863 ORTHO05D009265 3.2e-11 71.6 87 56.3
Lj3g0003830 Lotus japonicus HOM05D007863 ORTHO05D009265 1.2e-10 69.7 78 52.6
Ca_01070_v3 Cicer arietinum L. HOM05D007863 ORTHO05D009265 1.6e-10 69.3 73 56.2
TPR.G37228 Trifolium pratense HOM05D007863 ORTHO05D009265 2.1e-10 68.9 100 51.0
Psat5g301160 Pisum sativum HOM05D007863 ORTHO05D009265 2.7e-10 68.6 77 57.1
Phvul.005G176000 Phaseolus vulgaris HOM05D007863 ORTHO05D009265 6.0e-10 67.4 71 59.2
Psat7g256040 Pisum sativum HOM05D007863 ORTHO05D009265 7.8e-10 67.0 84 51.2
FAN02G1499 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.0e-09 66.6 44 75.0
FvH4_6g30170 Fragaria vesca HOM05D007863 ORTHO05D009265 1.7e-09 65.9 54 64.8
FAN14G0247 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.7e-09 65.9 54 64.8
Lalb_Chr25g0279481 Lupinus albus HOM05D007863 ORTHO05D009265 1.7e-09 65.9 45 73.3
Cfa001994 Carpinus fangiana HOM05D007863 ORTHO05D009265 2.3e-09 65.5 37 86.5
FAN05G0465 Fragaria x ananassa HOM05D007863 ORTHO05D009265 2.3e-09 65.5 54 63.0
FAN09G3905 Fragaria x ananassa HOM05D007863 ORTHO05D009265 2.3e-09 65.5 54 63.0
Lalb_Chr14g0373721 Lupinus albus HOM05D007863 ORTHO05D009265 2.3e-09 65.5 95 46.3
Glyma.07G031800 Glycine max HOM05D007863 ORTHO05D009265 3.0e-09 65.1 71 56.3
Medtr2g103440 Medicago truncatula HOM05D007863 ORTHO05D009265 3.9e-09 64.7 95 48.4
Lalb_Chr04g0262451 Lupinus albus HOM05D007863 ORTHO05D009265 6.6e-09 63.9 82 51.2
Prupe.3G082000 Prunus persica HOM05D007863 ORTHO05D009265 1.1e-08 63.2 49 65.3
PGR102G1764 Punica granatum HOM05D007863 ORTHO05D009265 1.1e-08 63.2 64 57.8
Ciclev10027122m.g Citrus clementina HOM05D007863 ORTHO05D009265 1.5e-08 62.8 57 59.6
Haze_16524 Corylus avellana HOM05D007863 ORTHO05D009265 2.5e-08 62.0 83 50.6
Potri.003G062300 Populus trichocarpa HOM05D007863 ORTHO05D009265 2.5e-08 62.0 51 64.7
Glyma.08G211000 Glycine max HOM05D007863 ORTHO05D009265 4.3e-08 61.2 57 63.2
CANSAT56G0457 Cannabis sativa HOM05D007863 ORTHO05D009265 5.6e-08 60.8 35 85.7
CAN.G407.102 Capsicum annuum HOM05D007863 ORTHO05D009265 7.3e-08 60.5 63 54.0
MD17G1207500 Malus domestica HOM05D007863 ORTHO05D009265 7.3e-08 60.5 73 50.7
RcHm_v2.0_Chr2g0136401 Rosa chinensis HOM05D007863 ORTHO05D009265 9.6e-08 60.1 81 45.7
Manes.11G054000 Manihot esculenta HOM05D007863 ORTHO05D009265 1.2e-07 59.7 71 52.1
Atru.chr1.3052 Acer truncatum HOM05D007863 ORTHO05D009265 1.6e-07 59.3 34 88.2
Nitab4.5_0010254g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 2.1e-07 58.9 69 50.7
Potri.001G171701 Populus trichocarpa HOM05D007863 ORTHO05D009265 2.1e-07 58.9 51 58.8
CiPaw.01G245400 Carya illinoinensis HOM05D007863 ORTHO05D009265 2.8e-07 58.5 79 45.6
DCAR_025492 Daucus carota HOM05D007863 ORTHO05D009265 2.8e-07 58.5 73 52.1
Sabra03G0036200 Salix brachista HOM05D007863 ORTHO05D009265 3.6e-07 58.2 73 50.7
Hma1.2p1_0515F.1_g170180 Hydrangea macrophylla HOM05D007863 ORTHO05D009265 6.2e-07 57.4 80 48.8
Nitab4.5_0001764g0040 Nicotiana tabacum HOM05D007863 ORTHO05D009265 6.2e-07 57.4 69 49.3
TWI12G0528 Tripterygium wilfordii HOM05D007863 ORTHO05D009265 6.2e-07 57.4 78 48.7
AUR62011544 Chenopodium quinoa HOM05D007863 ORTHO05D009265 8.1e-07 57.0 56 55.4
MBI01_g37813_MAGBIO Magnolia biondii HOM05D007863 ORTHO05D009265 8.1e-07 57.0 51 58.8
Gohir.A10G075500 Gossypium hirsutum HOM05D007863 ORTHO05D009265 1.1e-06 56.6 90 46.7
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 1.1e-06 56.6 36 72.2
COL.COLO4_12919 Corchorus olitorius HOM05D007863 ORTHO05D009265 1.4e-06 56.2 58 55.2
ClCG09G002780 Citrullus lanatus HOM05D007863 ORTHO05D009265 1.8e-06 55.8 34 79.4
DCAR_016255 Daucus carota HOM05D007863 ORTHO05D009265 2.4e-06 55.5 36 72.2
Migut.I00793 Erythranthe guttata HOM05D007863 ORTHO05D009265 2.4e-06 55.5 94 42.6
Gohir.D10G076000 Gossypium hirsutum HOM05D007863 ORTHO05D009265 3.1e-06 55.1 90 45.6
Gorai.011G081800 Gossypium raimondii HOM05D007863 ORTHO05D009265 3.1e-06 55.1 90 45.6
QL05p028236 Quercus lobata HOM05D007863 ORTHO05D009265 3.1e-06 55.1 82 45.1
arahy.Tifrunner.gnm1.ann1.YMK8B4 Arachis hypogaea HOM05D007863 ORTHO05D009265 4.0e-06 54.7 36 72.2
CsaV3_7G032550 Cucumis sativus L. HOM05D007863 ORTHO05D009265 4.0e-06 54.7 34 76.5
MELO3C023407.2 Cucumis melo HOM05D007863 ORTHO05D009265 5.2e-06 54.3 34 76.5
Rhsim08G0215300 Rhododendron simsii HOM05D007863 ORTHO05D009265 5.2e-06 54.3 69 52.2
Solyc03g116510.1 Solanum lycopersicum HOM05D007863 ORTHO05D009265 6.9e-06 53.9 76 50.0
Sopen03g035400 Solanum pennellii HOM05D007863 ORTHO05D009265 6.9e-06 53.9 76 50.0
CSS0005162 Camellia sinensis var. sinensis HOM05D007863 ORTHO05D009265 9.0e-06 53.5 75 44.0
Cpa.g.sc10.233 Carica papaya HOM05D007863 ORTHO05D009265 9.0e-06 53.5 65 49.2
Manes.04G115800 Manihot esculenta HOM05D007863 ORTHO05D009265 9.0e-06 53.5 66 47.0


User provided reference genes

Program Settings