Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 8.5e-185 650.2 330 100.0
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 4.0e-166 588.2 330 92.1
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 4.7e-159 564.7 323 87.9
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.9e-131 473.0 335 76.1
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 7.1e-131 471.1 336 75.3
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 3.5e-130 468.8 328 75.6
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 2.3e-129 466.1 338 73.1
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 4.3e-128 461.8 332 75.9
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.1e-126 457.2 334 74.0
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 9.9e-117 424.1 291 74.2
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 2.3e-113 412.9 296 74.0
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 2.3e-113 412.9 296 74.0
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 3.0e-113 412.5 306 67.6
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 9.0e-110 401.0 305 68.5
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.0e-105 387.5 331 62.5
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.8e-105 386.7 335 62.1
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.3e-105 386.3 310 62.6
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.3e-105 386.3 332 65.4
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 5.1e-105 385.2 309 67.0
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 6.7e-105 384.8 310 67.1
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.7e-105 384.4 330 60.6
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 8.7e-105 384.4 334 60.8
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 4.3e-104 382.1 325 62.5
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 6.2e-103 378.3 334 59.6
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 8.1e-103 377.9 334 60.2
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.4e-102 376.3 296 63.2
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 2.4e-102 376.3 331 61.6
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.4e-102 376.3 334 59.6
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.1e-102 375.9 334 59.3
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.1e-102 375.9 253 72.3
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 9.0e-102 374.4 259 71.8
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.5e-101 373.6 334 58.7
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.0e-100 370.9 308 64.0
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 2.2e-100 369.8 340 58.5
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.9e-100 368.6 319 60.8
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 4.9e-100 368.6 292 63.7
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 6.5e-100 368.2 288 66.3
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.5e-100 368.2 312 62.2
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.4e-100 367.9 307 63.8
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.9e-99 366.7 294 64.3
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 4.2e-99 365.5 302 63.2
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.6e-98 363.6 305 61.6
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.7e-98 362.8 306 63.1
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 2.7e-98 362.8 325 60.6
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.0e-97 360.9 321 59.8
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 3.0e-97 359.4 317 60.6
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 3.9e-97 359.0 309 59.2
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.9e-97 359.0 323 59.8
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 6.7e-97 358.2 295 63.1
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 6.7e-97 358.2 323 59.4
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 6.7e-97 358.2 289 63.0
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 8.7e-97 357.8 328 56.4
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 2.5e-96 356.3 329 56.8
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 2.5e-96 356.3 300 62.0
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 7.4e-96 354.8 309 58.6
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 2.8e-95 352.8 310 57.1
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.8e-95 352.8 304 59.2
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.8e-95 352.8 325 57.8
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 3.7e-95 352.4 308 57.8
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 3.7e-95 352.4 308 57.8
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 3.7e-95 352.4 312 56.7
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 6.2e-95 351.7 308 58.1
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.8e-94 350.1 325 57.8
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.4e-94 349.7 313 59.4
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 3.1e-94 349.4 314 58.3
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 4.0e-94 349.0 308 57.8
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.0e-94 349.0 320 58.4
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 2.0e-93 346.7 323 56.3
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.0e-93 346.7 304 58.2
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 2.0e-93 346.7 313 56.2
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.6e-93 346.3 207 85.5
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.5e-93 345.5 284 62.7
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.2e-92 343.2 326 55.8
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.2e-92 343.2 308 59.1
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 1.4e-91 340.5 292 61.0
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 3.5e-90 335.9 333 56.2
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-89 334.0 334 53.0
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.3e-89 333.2 312 56.1
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 4.3e-88 328.9 304 55.3
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 5.7e-88 328.6 301 59.1
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 6.3e-87 325.1 298 57.4
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.1e-86 324.3 289 56.4
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.4e-86 323.9 275 60.0
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.4e-86 323.9 329 51.7
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.4e-86 323.2 326 55.2
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 4.1e-86 322.4 288 58.7
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 4.1e-86 322.4 309 55.0
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 9.0e-86 321.2 330 51.8
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.5e-85 320.5 292 57.5
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.5e-85 320.5 257 63.8
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.6e-85 319.7 308 55.2
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.6e-85 319.7 307 54.7
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.2e-84 316.6 307 54.1
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.0e-84 315.5 289 57.4
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 1.1e-83 314.3 290 56.9
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.9e-83 313.5 311 55.3
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.2e-83 311.6 281 56.9
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 9.4e-83 311.2 300 53.0
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 2.1e-82 310.1 250 60.8
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 3.6e-82 309.3 251 59.0
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 3.6e-82 309.3 278 58.3
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 4.6e-82 308.9 255 62.4
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.9e-82 308.1 322 54.0
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.0e-81 307.8 255 60.8
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.0e-81 307.8 321 53.3
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.4e-81 307.4 255 60.8
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.8e-81 307.0 251 60.6
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.8e-81 307.0 276 57.6
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.8e-81 307.0 311 52.7
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 3.0e-81 306.2 366 51.4
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 6.7e-81 305.1 302 54.3
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 2.5e-80 303.1 280 60.0
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.3e-79 300.8 259 57.5
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.7e-79 300.4 305 50.2
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.7e-79 300.4 278 56.5
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 2.2e-79 300.1 272 55.1
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.8e-79 299.7 318 48.7
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.8e-78 297.0 252 62.3
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.4e-78 296.6 276 56.9
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.4e-78 296.6 293 51.9
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 3.1e-78 296.2 256 59.0
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.1e-78 295.8 309 51.1
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.1e-78 295.8 309 51.1
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 6.9e-78 295.0 256 55.9
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.6e-77 293.1 297 51.9
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 4.5e-77 292.4 324 48.1
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 8.5e-76 288.1 256 55.9
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 8.5e-76 288.1 273 56.4
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.4e-75 287.3 261 54.8
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 5.5e-75 285.4 296 52.7
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.2e-74 284.3 303 51.2
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 3.6e-74 282.7 262 51.5
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 3.6e-74 282.7 270 54.4
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 4.7e-74 282.3 308 49.7
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 1.0e-73 281.2 262 51.5
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.1e-72 277.7 263 58.9
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 5.7e-72 275.4 291 53.3
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.7e-71 273.9 303 48.2
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 2.2e-71 273.5 250 54.8
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 1.1e-70 271.2 325 45.2
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.4e-70 270.8 294 46.6
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.4e-70 270.8 330 44.2
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.8e-70 270.4 327 43.1
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 2.4e-70 270.0 259 54.8
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.1e-70 269.6 286 47.9
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 3.1e-70 269.6 321 45.8
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 5.3e-70 268.9 292 47.3
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 5.3e-70 268.9 290 47.9
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 2.6e-69 266.5 295 46.8
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.7e-68 263.8 319 46.4
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 6.1e-66 255.4 158 75.3
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 5.2e-65 252.3 282 46.8
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 5.0e-60 235.7 207 57.0
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.9e-59 233.8 157 70.1
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 4.0e-57 226.1 178 60.7
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.8e-54 217.2 151 73.5
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.0e-54 215.3 160 63.8
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 9.1e-54 214.9 220 50.0
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.3e-52 211.1 215 50.2
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.5e-51 207.6 231 49.8
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 3.4e-48 196.4 225 49.8
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.9e-43 180.6 240 44.6
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 3.3e-43 179.9 256 45.3
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.5e-40 168.7 216 44.0
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 1.0e-36 158.3 253 35.6
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 7.3e-35 152.1 127 66.9
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 9.8e-32 141.7 89 74.2
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 4.1e-30 136.3 161 46.0
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.6e-26 123.2 79 73.4
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 4.0e-25 119.8 104 58.7
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.4e-22 111.3 77 72.7
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 5.4e-22 109.4 80 60.0
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 7.1e-22 109.0 84 63.1
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 7.1e-14 82.4 56 69.6
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.6e-13 81.3 116 36.2


User provided reference genes

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