Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 0.0e+00 1427.5 818 100.0
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 0.0e+00 1182.2 820 81.8
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 2.9e-242 842.4 963 57.4
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 3.7e-197 692.6 837 51.3
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 1.0e-191 674.5 823 52.7
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 3.0e-191 672.9 817 53.4
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 2.3e-178 630.2 865 47.5
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.6e-176 622.9 840 48.5
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 6.8e-175 618.6 833 50.4
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 5.7e-174 615.5 937 43.3
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 1.6e-168 597.4 848 45.4
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 4.9e-165 585.9 757 48.9
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 1.3e-157 561.2 790 50.0
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 1.5e-145 521.2 782 48.1
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 1.8e-143 514.2 782 48.5
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.0e-117 428.7 683 44.1
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 2.3e-106 391.0 853 36.7
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 2.4e-103 380.9 963 33.6
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 6.5e-101 372.9 922 33.0
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 4.8e-96 356.7 847 35.8
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 1.8e-95 354.8 834 34.4
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 6.7e-90 336.3 853 33.8
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 1.7e-88 331.6 843 33.7
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 4.8e-88 330.1 875 35.0
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 1.5e-84 318.5 872 33.1
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 9.4e-84 315.8 830 33.1
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 1.7e-80 305.1 867 35.1
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 2.2e-80 304.7 883 31.4
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 2.8e-80 304.3 832 32.2
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 4.8e-80 303.5 826 33.1
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 8.2e-80 302.8 842 31.6
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 8.2e-80 302.8 842 31.6
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.8e-79 301.6 836 35.5
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 3.1e-79 300.8 841 31.9
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 4.5e-78 297.0 923 30.7
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.5e-78 297.0 828 31.6
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.0e-77 295.8 844 32.2
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 2.2e-77 294.7 840 31.8
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.2e-77 294.7 847 32.9
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 3.8e-77 293.9 846 32.3
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 9.4e-76 289.3 881 30.8
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.7e-75 287.7 825 31.3
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 6.1e-75 286.6 845 32.0
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 6.1e-75 286.6 823 32.3
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 8.0e-75 286.2 835 35.2
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 1.4e-74 285.4 836 31.6
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 1.8e-74 285.0 386 47.2
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 4.0e-74 283.9 851 30.9
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 1.0e-66 259.2 840 31.1
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 1.0e-66 259.2 793 30.3
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 1.8e-66 258.5 776 31.6
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 2.0e-65 255.0 838 30.3
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 7.5e-65 253.1 835 30.5
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 1.3e-64 252.3 838 29.7
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 8.3e-64 249.6 395 41.5
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 7.0e-63 246.5 825 31.0
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 9.2e-63 246.1 841 30.8
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 1.2e-62 245.7 829 30.9
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 2.7e-62 244.6 889 29.6
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 1.7e-61 241.9 825 30.4
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 3.8e-61 240.7 947 27.3
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.2e-59 235.7 826 29.2
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.1e-59 235.0 836 33.9
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 6.8e-58 229.9 760 30.9
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.4e-57 227.6 836 30.0
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.4e-57 227.6 839 29.9
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 7.5e-57 226.5 765 31.1
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.3e-56 225.7 765 30.8
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 1.7e-56 225.3 603 32.8
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.2e-56 224.9 834 33.2
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 6.4e-56 223.4 849 28.4
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 4.1e-55 220.7 828 28.1
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.5e-54 217.6 798 29.2
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 3.5e-54 217.6 791 33.2
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.3e-53 215.7 843 28.0
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.7e-53 215.3 830 32.9
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 3.0e-53 214.5 838 29.1
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 3.9e-53 214.2 755 30.3
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 1.1e-52 212.6 879 29.2
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 3.3e-52 211.1 937 28.5
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 4.3e-52 210.7 847 28.5
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 1.6e-51 208.8 831 27.4
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 4.7e-51 207.2 390 37.9
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 8.0e-51 206.5 816 26.8
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.3e-50 204.9 392 39.8
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 6.8e-50 203.4 824 28.3
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.6e-49 201.4 359 37.9
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 5.8e-49 200.3 860 27.2
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 2.2e-48 198.4 876 25.9
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 6.4e-48 196.8 849 27.7
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 6.4e-48 196.8 858 27.7
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 2.1e-46 191.8 837 28.3
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.1e-46 191.8 749 29.4
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.5e-46 191.0 842 28.0
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 3.0e-45 188.0 961 25.2
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 1.6e-43 182.2 828 28.5
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 2.1e-43 181.8 821 27.9
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 4.7e-43 180.6 709 33.6
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 6.2e-43 180.3 171 59.1
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 4.0e-42 177.6 828 27.7
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 6.8e-42 176.8 847 27.4
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 8.9e-42 176.4 835 27.1
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 2.0e-41 175.3 380 35.8
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 9.9e-41 172.9 679 28.1
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 2.2e-40 171.8 844 27.1
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 6.4e-40 170.2 828 27.7
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 1.4e-39 169.1 842 26.2
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 1.3e-37 162.5 833 25.2
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 1.3e-37 162.5 854 24.7
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 6.8e-34 150.2 761 25.2
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 8.9e-34 149.8 740 27.3
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 2.9e-32 144.8 354 33.3
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 8.4e-32 143.3 819 24.8
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 8.4e-32 143.3 832 25.4
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.4e-31 142.5 173 48.6
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.9e-31 142.1 865 25.1
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 2.7e-30 138.3 839 24.3
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 6.0e-30 137.1 858 25.1
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 1.0e-29 136.3 828 23.7
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.7e-29 135.6 438 32.6
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.1e-26 126.3 247 38.9
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 2.0e-25 122.1 173 43.4
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 3.8e-24 117.9 843 25.5
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 8.4e-24 116.7 697 25.5
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.6e-22 112.5 140 47.1
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 5.6e-20 104.0 134 45.5
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 1.3e-19 102.8 107 50.5
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 3.6e-19 101.3 538 24.7
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 3.1e-18 98.2 353 31.7
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 3.1e-18 98.2 776 22.6
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 4.0e-18 97.8 77 62.3
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 5.8e-17 94.0 166 36.7
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 1.9e-15 89.0 151 39.1
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.9e-15 89.0 180 37.2
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 5.4e-15 87.4 202 34.2
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 5.4e-15 87.4 123 41.5
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 1.2e-14 86.3 216 32.4
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.1e-14 85.5 114 44.7
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 1.1e-12 79.7 84 48.8
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 2.5e-12 78.6 95 46.3
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 8.1e-11 73.6 114 34.2
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 5.3e-10 70.9 54 55.6
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 9.0e-10 70.1 107 43.0
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 7.9e-06 57.0 148 32.4
TPR.G8483 Trifolium pratense HOM05D004831 ORTHO05D048837 7.9e-06 57.0 181 33.1


User provided reference genes

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