Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G358333 Glycine max HOM05D005989 ORTHO05D000022 5.9e-61 237.3 114 100.0
Lalb_Chr18g0052711 Lupinus albus HOM05D005989 ORTHO05D000022 8.7e-20 100.5 94 48.9
TPR.G13740 Trifolium pratense HOM05D005989 ORTHO05D000022 4.3e-19 98.2 95 47.4
Psat2g155160 Pisum sativum HOM05D005989 ORTHO05D000022 5.6e-19 97.8 94 45.7
Lalb_Chr21g0306271 Lupinus albus HOM05D005989 ORTHO05D000022 8.1e-18 94.0 94 47.9
TPR.G6692 Trifolium pratense HOM05D005989 ORTHO05D000022 2.4e-17 92.4 94 43.6
RcHm_v2.0_Chr3g0459251 Rosa chinensis HOM05D005989 ORTHO05D000022 3.1e-17 92.0 93 43.0
RcHm_v2.0_Chr4g0395061 Rosa chinensis HOM05D005989 ORTHO05D000022 5.3e-17 91.3 93 43.0
RcHm_v2.0_Chr7g0184971 Rosa chinensis HOM05D005989 ORTHO05D000022 6.9e-17 90.9 96 44.8
TPR.G36653 Trifolium pratense HOM05D000003 ORTHO05D000006 6.9e-17 90.9 92 45.7
RcHm_v2.0_Chr1g0352021 Rosa chinensis HOM05D005989 ORTHO05D000022 9.0e-17 90.5 94 42.6
RcHm_v2.0_Chr6g0264461 Rosa chinensis HOM05D005989 ORTHO05D000022 9.0e-17 90.5 94 42.6
RcHm_v2.0_Chr6g0278601 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-16 90.1 92 44.6
TPR.G37438 Trifolium pratense HOM05D005989 ORTHO05D000022 2.6e-16 89.0 94 40.4
RcHm_v2.0_Chr4g0409421 Rosa chinensis HOM05D005989 ORTHO05D000022 1.3e-15 86.7 94 40.4
Phvul.004G137000 Phaseolus vulgaris HOM05D005989 ORTHO05D000022 1.7e-15 86.3 91 38.5
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 6.4e-15 84.3 94 43.6
RcHm_v2.0_Chr3g0462451 Rosa chinensis HOM05D005989 ORTHO05D000022 1.1e-14 83.6 94 43.6
Psat0s1775g0320 Pisum sativum HOM05D005989 ORTHO05D000022 1.4e-14 83.2 95 38.9
RcHm_v2.0_Chr7g0185631 Rosa chinensis HOM05D000155 ORTHO05D000022 3.2e-14 82.0 94 42.6
TPR.G16745 Trifolium pratense HOM05D005989 ORTHO05D000022 3.2e-14 82.0 94 38.3
Lalb_Chr06g0169621 Lupinus albus HOM05D005989 ORTHO05D000022 5.4e-14 81.3 85 40.0
RcHm_v2.0_Chr2g0167951 Rosa chinensis HOM05D005989 ORTHO05D000022 5.4e-14 81.3 92 39.1
Atru.chr2.2552 Acer truncatum HOM05D005989 ORTHO05D000022 7.1e-14 80.9 93 43.0
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 9.3e-14 80.5 94 41.5
MD07G1021300 Malus domestica HOM05D000155 ORTHO05D000022 1.2e-13 80.1 93 40.9
MD13G1019000 Malus domestica HOM05D000155 ORTHO05D000022 2.1e-13 79.3 96 40.6
Medtr8g479410 Medicago truncatula HOM05D005989 ORTHO05D000022 2.1e-13 79.3 78 41.0
Atru.chr1.1636 Acer truncatum HOM05D005989 ORTHO05D000022 3.5e-13 78.6 93 40.9
MD02G1050700 Malus domestica HOM05D000155 ORTHO05D000022 3.5e-13 78.6 95 40.0
Medtr7g031765 Medicago truncatula HOM05D009351 ORTHO05D011822 4.6e-13 78.2 90 42.2
Lalb_Chr06g0160781 Lupinus albus HOM05D005989 ORTHO05D000022 7.9e-13 77.4 71 46.5
Atru.chr5.1911 Acer truncatum HOM05D005989 ORTHO05D000022 1.0e-12 77.0 95 43.2
Atru.chr2.2454 Acer truncatum HOM05D005989 ORTHO05D000022 1.3e-12 76.6 93 39.8
Medtr7g059380 Medicago truncatula HOM05D005989 ORTHO05D000022 1.3e-12 76.6 65 49.2
TPR.G15449 Trifolium pratense HOM05D005989 ORTHO05D000022 2.3e-12 75.9 90 42.2
TPR.G18660 Trifolium pratense HOM05D005989 ORTHO05D000022 2.3e-12 75.9 91 39.6
TPR.G23861 Trifolium pratense HOM05D005989 ORTHO05D000022 2.3e-12 75.9 66 47.0
Medtr3g052720 Medicago truncatula HOM05D000001 ORTHO05D000003 3.0e-12 75.5 96 41.7
Lalb_Chr08g0232201 Lupinus albus HOM05D005989 ORTHO05D000022 3.9e-12 75.1 70 45.7
Medtr6g075360 Medicago truncatula HOM05D009351 ORTHO05D011822 5.1e-12 74.7 87 43.7
RcHm_v2.0_Chr2g0133661 Rosa chinensis HOM05D000155 ORTHO05D000022 5.1e-12 74.7 92 42.4
Psat1g101960 Pisum sativum HOM05D000003 ORTHO05D000007 1.1e-11 73.6 87 40.2
Prupe.4G283800 Prunus persica HOM05D005989 ORTHO05D000651 1.5e-11 73.2 87 37.9
RcHm_v2.0_Chr2g0120021 Rosa chinensis HOM05D005989 ORTHO05D000022 1.5e-11 73.2 94 37.2
Lalb_Chr02g0160271 Lupinus albus HOM05D005989 ORTHO05D000022 2.5e-11 72.4 80 42.5
RcHm_v2.0_Chr1g0316991 Rosa chinensis HOM05D005989 ORTHO05D000022 2.5e-11 72.4 94 37.2
Medtr1g083630 Medicago truncatula HOM05D000008 ORTHO05D000005 4.3e-11 71.6 56 48.2
Phvul.010G021300 Phaseolus vulgaris HOM05D005989 ORTHO05D000022 9.6e-11 70.5 63 50.8
Lalb_Chr23g0276181 Lupinus albus HOM05D005989 ORTHO05D000022 4.8e-10 68.2 92 38.0
Medtr8g076430 Medicago truncatula HOM05D005989 ORTHO05D000022 6.2e-10 67.8 62 51.6
RcHm_v2.0_Chr3g0465511 Rosa chinensis HOM05D000155 ORTHO05D000022 6.2e-10 67.8 83 43.4
Medtr0070s0030 Medicago truncatula HOM05D015419 ORTHO05D011822 8.1e-10 67.4 92 33.7
Medtr6g061220 Medicago truncatula HOM05D005989 ORTHO05D000022 8.1e-10 67.4 54 51.9
PSO541G4268 Papaver somniferum HOM05D005989 ORTHO05D000022 1.1e-09 67.0 95 35.8
PSO832G3439 Papaver somniferum HOM05D005989 ORTHO05D000022 1.1e-09 67.0 95 37.9
Prupe.1G484600 Prunus persica HOM05D005989 ORTHO05D000022 1.8e-09 66.2 84 41.7
Medtr4g031410 Medicago truncatula HOM05D001538 ORTHO05D000007 4.0e-09 65.1 84 41.7
Medtr4g031755 Medicago truncatula HOM05D001538 ORTHO05D000007 4.0e-09 65.1 84 41.7
RcHm_v2.0_Chr3g0454631 Rosa chinensis HOM05D002340 ORTHO05D003624 6.9e-09 64.3 71 40.8
Glyma.15G263266 Glycine max HOM05D005989 ORTHO05D000022 9.0e-09 63.9 80 41.2
RcHm_v2.0_Chr4g0417481 Rosa chinensis HOM05D005989 ORTHO05D000022 1.2e-08 63.5 94 35.1
FvH4_5g27541 Fragaria vesca HOM05D005989 ORTHO05D000022 1.5e-08 63.2 66 45.5
RcHm_v2.0_Chr2g0129631 Rosa chinensis HOM05D005989 ORTHO05D000651 2.6e-08 62.4 68 42.6
Medtr4g053908 Medicago truncatula HOM05D009299 ORTHO05D000022 3.4e-08 62.0 51 56.9
Aqoxy1G02708 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.3e-07 60.1 82 37.8
Psat4g016640 Pisum sativum HOM05D005989 ORTHO05D000022 1.3e-07 60.1 94 31.9
Medtr2g022360 Medicago truncatula HOM05D005989 ORTHO05D000022 1.7e-07 59.7 56 42.9
Medtr2g010070 Medicago truncatula HOM05D005989 ORTHO05D000022 2.2e-07 59.3 58 48.3
RcHm_v2.0_Chr7g0237631 Rosa chinensis HOM05D005989 ORTHO05D000022 2.2e-07 59.3 87 31.0
TPR.G3914 Trifolium pratense HOM05D005989 ORTHO05D000022 2.9e-07 58.9 59 52.5
TPR.G40388 Trifolium pratense HOM05D005989 ORTHO05D000022 2.9e-07 58.9 54 51.9
Lalb_Chr07g0188801 Lupinus albus HOM05D005989 ORTHO05D000022 3.8e-07 58.5 93 38.7
Medtr6g038610 Medicago truncatula HOM05D005989 ORTHO05D000022 6.4e-07 57.8 40 60.0
Medtr3g092860 Medicago truncatula HOM05D005989 ORTHO05D000022 1.1e-06 57.0 50 46.0
FvH4_3g39131 Fragaria vesca HOM05D005989 ORTHO05D000022 1.9e-06 56.2 68 38.2
Atru.chr1.3183 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-06 55.8 52 48.1
Medtr6g071310 Medicago truncatula HOM05D005989 ORTHO05D000022 2.4e-06 55.8 41 58.5
Atru.chr8.108 Acer truncatum HOM05D000003 ORTHO05D000022 3.2e-06 55.5 76 36.8
Medtr3g448510 Medicago truncatula HOM05D009351 ORTHO05D011822 4.2e-06 55.1 83 32.5
RcHm_v2.0_Chr3g0472841 Rosa chinensis HOM05D000155 ORTHO05D000022 4.2e-06 55.1 59 45.8
Medtr0553s0050 Medicago truncatula HOM05D009351 ORTHO05D011822 5.5e-06 54.7 68 41.2
Medtr8g069665 Medicago truncatula HOM05D000111 ORTHO05D000022 5.5e-06 54.7 79 39.2
Aqoxy3G01495 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 9.3e-06 53.9 63 46.0


User provided reference genes

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