Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 6.0e-152 540.8 273 100.0
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 8.9e-47 191.4 155 72.3
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 2.9e-45 186.4 155 71.0
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 3.9e-42 176.0 214 53.3
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 2.1e-40 170.2 187 58.8
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 3.6e-40 169.5 215 50.7
Glyma.13G099002 Glycine max HOM05D032893 ORTHO05D007459 2.6e-38 163.3 181 54.1
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 2.1e-35 153.7 183 53.6
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 2.5e-33 146.7 183 50.8
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 1.3e-32 144.4 173 53.2
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 9.0e-31 138.3 183 54.1
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 2.6e-30 136.7 183 52.5
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 5.8e-30 135.6 184 51.1
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 2.9e-29 133.3 183 51.9
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.4e-23 113.6 172 41.3
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.4e-23 113.6 172 41.3
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 3.8e-21 106.3 185 38.4
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 3.8e-21 106.3 167 40.1
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 6.5e-21 105.5 170 38.8
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 1.2e-19 101.3 179 35.8
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 4.6e-19 99.4 161 36.6
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 4.6e-19 99.4 172 39.5
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 3.9e-18 96.3 172 38.4
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 3.9e-18 96.3 185 33.5
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 6.7e-18 95.5 167 39.5
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 6.7e-18 95.5 156 40.4
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 6.7e-18 95.5 157 38.9
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 8.7e-18 95.1 172 38.4
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 1.1e-17 94.7 167 37.1
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 1.5e-17 94.4 159 37.7
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 1.9e-17 94.0 189 35.4
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 4.3e-17 92.8 159 37.1
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 5.7e-17 92.4 166 36.1
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 5.7e-17 92.4 167 37.1
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 1.3e-16 91.3 153 38.6
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 1.3e-16 91.3 51 84.3
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 1.6e-16 90.9 167 35.3
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 2.1e-16 90.5 185 34.1
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.1e-16 90.5 166 35.5
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 2.8e-16 90.1 167 36.5
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 2.8e-16 90.1 167 35.3
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 3.7e-16 89.7 155 36.1
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 4.8e-16 89.4 172 36.0
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 8.2e-16 88.6 188 31.9
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.4e-15 87.8 107 44.9
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 2.4e-15 87.0 168 33.9
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 2.4e-15 87.0 190 28.4
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 3.1e-15 86.7 164 34.1
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 4.1e-15 86.3 157 30.6
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 4.1e-15 86.3 168 29.8
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 4.1e-15 86.3 105 49.5
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 5.3e-15 85.9 168 29.8
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 6.9e-15 85.5 154 33.8
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 6.9e-15 85.5 167 36.5
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 1.5e-14 84.3 136 38.2
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.5e-14 84.3 154 33.1
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 2.0e-14 84.0 154 33.1
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.0e-14 84.0 154 33.1
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 2.0e-14 84.0 168 31.5
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 2.6e-14 83.6 165 34.5
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 2.6e-14 83.6 163 35.6
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 7.6e-14 82.0 175 34.9
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 1.0e-13 81.6 165 30.3
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 1.0e-13 81.6 165 30.3
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 1.3e-13 81.3 132 37.9
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.7e-13 80.9 136 36.8
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 2.2e-13 80.5 165 29.7
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 2.2e-13 80.5 230 29.6
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 2.9e-13 80.1 168 33.3
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 5.0e-13 79.3 158 33.5
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 6.5e-13 79.0 165 29.1
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 8.4e-13 78.6 170 26.5
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.1e-12 78.2 159 30.2
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.2e-12 76.3 132 34.8
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 9.3e-12 75.1 173 31.2
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 9.3e-12 75.1 163 30.7
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 2.7e-11 73.6 181 26.0
Glyma.13G052251 Glycine max HOM05D032893 ORTHO05D213479 2.7e-11 73.6 41 80.5
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 6.1e-11 72.4 170 31.2
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 1.8e-10 70.9 154 33.1
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 2.3e-10 70.5 149 31.5
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 3.0e-10 70.1 175 30.9
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 3.0e-10 70.1 172 31.4
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.1e-09 68.2 165 32.7
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 2.5e-09 67.0 108 36.1
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 5.7e-09 65.9 155 31.6
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 1.4e-07 61.2 141 30.5
Glyma.13G165633 Glycine max HOM05D032893 ORTHO05D212677 4.1e-07 59.7 34 82.4
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 4.5e-06 56.2 122 33.6
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 7.7e-06 55.5 154 29.2


User provided reference genes

Program Settings