Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.8e-273 945.3 462 100.0
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 5.6e-259 897.1 460 94.6
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.8e-249 865.5 460 88.0
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.7e-239 832.4 495 80.4
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 2.6e-232 808.5 445 85.4
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 2.7e-229 798.5 472 84.5
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 6.9e-225 783.9 439 85.2
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 6.5e-223 777.3 464 81.2
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 1.3e-215 753.1 440 82.3
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 1.3e-215 753.1 461 79.2
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 2.0e-208 729.2 436 80.5
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.0e-207 726.9 451 77.6
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.7e-207 726.1 442 78.7
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 2.9e-207 725.3 451 77.8
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 2.5e-206 722.2 455 76.5
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.6e-205 719.5 364 91.2
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.4e-204 716.5 364 90.7
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 8.8e-204 713.8 460 74.6
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 3.3e-203 711.8 452 76.3
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 3.3e-203 711.8 466 74.5
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 3.3e-203 711.8 453 76.2
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 7.4e-203 710.7 400 84.0
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.3e-202 709.9 440 77.0
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.3e-202 709.9 446 76.9
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.7e-202 709.5 450 76.4
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.7e-202 708.4 467 74.3
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.8e-202 708.0 458 77.7
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 6.3e-202 707.6 462 73.8
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 6.3e-202 707.6 437 76.9
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 1.1e-201 706.8 454 74.9
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.4e-201 706.4 463 76.7
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.4e-201 706.4 436 76.8
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 5.3e-201 704.5 438 77.9
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.2e-200 703.4 448 75.9
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 2.6e-200 702.2 449 74.4
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.6e-200 702.2 445 75.3
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 3.4e-200 701.8 453 74.0
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 4.5e-200 701.4 449 74.2
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 4.5e-200 701.4 466 72.7
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 7.7e-200 700.7 454 73.8
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 7.7e-200 700.7 454 74.7
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.0e-199 700.3 449 74.2
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.0e-199 700.3 440 76.6
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 1.7e-199 699.5 461 76.6
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 3.8e-199 698.4 463 76.2
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 3.8e-199 698.4 449 74.6
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 3.8e-199 698.4 436 75.9
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.0e-199 698.0 439 75.6
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 5.0e-199 698.0 437 75.3
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 8.5e-199 697.2 454 73.3
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.1e-198 696.8 458 73.6
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.9e-198 696.0 437 77.1
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 2.5e-198 695.7 458 72.9
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 2.5e-198 695.7 465 73.3
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 2.5e-198 695.7 465 73.3
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.2e-198 695.3 436 77.5
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 5.5e-198 694.5 449 73.7
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 7.2e-198 694.1 437 77.6
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 7.2e-198 694.1 437 75.1
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.2e-197 693.3 470 72.1
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 1.6e-197 693.0 464 73.5
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 2.1e-197 692.6 436 75.0
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 2.1e-197 692.6 439 75.6
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.7e-197 692.2 447 74.5
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 4.7e-197 691.4 467 73.4
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 4.7e-197 691.4 467 73.0
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.0e-196 690.3 441 74.4
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.0e-196 690.3 470 71.9
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 1.4e-196 689.9 459 72.5
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.4e-196 689.9 437 74.8
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.4e-196 689.9 447 75.2
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.8e-196 689.5 465 73.1
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.3e-196 689.1 474 71.1
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.3e-196 689.1 436 75.0
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 3.0e-196 688.7 437 74.6
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 8.8e-196 687.2 441 73.2
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 2.6e-195 685.6 437 74.4
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 3.3e-195 685.3 438 73.3
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.7e-195 684.5 447 73.4
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 7.4e-195 684.1 464 72.6
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.7e-194 682.9 437 75.1
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 2.8e-194 682.2 438 74.4
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.8e-194 682.2 464 72.4
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 3.7e-194 681.8 439 73.3
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 4.8e-194 681.4 465 71.4
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.8e-194 681.4 444 75.7
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 6.3e-194 681.0 439 73.8
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 1.1e-193 680.2 459 72.8
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 1.4e-193 679.9 438 72.1
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.4e-193 679.9 444 73.9
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.0e-191 673.7 436 74.3
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 2.9e-191 672.2 443 72.7
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.9e-191 672.2 439 72.4
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 3.8e-191 671.8 440 71.4
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 8.5e-191 670.6 435 72.6
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 8.5e-191 670.6 395 78.7
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.5e-190 669.8 443 71.1
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.9e-190 669.5 435 71.7
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 7.2e-190 667.5 515 64.7
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.4e-188 663.3 447 71.4
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 3.0e-188 662.1 434 74.2
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 5.2e-188 661.4 441 72.3
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 6.7e-188 661.0 400 78.2
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 6.7e-188 661.0 410 73.9
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.5e-187 659.8 432 73.1
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.5e-187 659.8 434 74.9
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 4.8e-186 654.8 438 72.8
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.7e-183 646.4 442 71.3
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 1.6e-181 639.8 374 77.8
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 8.0e-181 637.5 433 70.9
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.5e-179 633.3 442 69.2
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 6.3e-178 627.9 443 69.3
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.2e-176 623.6 430 70.2
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 2.7e-176 622.5 322 87.9
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.7e-175 619.8 322 86.6
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 4.2e-174 615.1 443 68.8
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.8e-172 607.4 455 65.9
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.0e-171 606.3 342 81.3
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.3e-170 603.6 409 68.5
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 4.7e-165 585.1 288 92.0
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 2.0e-163 579.7 431 64.7
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 2.9e-162 575.9 333 78.4
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.8e-161 573.2 333 75.4
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.2e-160 570.5 288 88.5
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.0e-160 569.7 288 88.9
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 4.0e-148 528.9 285 81.8
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 1.5e-147 526.9 344 74.4
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.0e-143 512.7 334 67.4
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.1e-142 510.8 265 86.8
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.3e-138 497.3 397 67.3
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 9.3e-129 464.5 336 71.1
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.8e-124 450.3 374 54.5
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.8e-122 442.6 318 68.6
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.4e-121 440.7 302 70.9
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 3.2e-121 439.5 286 68.9
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.6e-109 400.6 344 52.9
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.2e-97 359.4 318 53.5
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.1e-92 343.2 273 63.7
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.4e-89 334.3 338 48.2
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 3.0e-71 273.5 136 90.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 7.7e-67 258.8 179 67.6
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.1e-56 224.2 109 91.7
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.1e-52 209.9 119 77.3
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.2e-51 208.4 118 77.1
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.9e-50 203.8 136 66.2
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 2.6e-46 190.7 127 69.3
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.0e-34 150.6 85 81.2
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 8.6e-34 149.1 85 80.0
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 5.8e-30 136.3 101 66.3
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 9.9e-30 135.6 81 74.1
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 9.9e-14 82.4 52 73.1
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 2.5e-09 67.8 130 39.2
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 1.1e-07 62.4 117 35.0


User provided reference genes

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