Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 2195.2 1133 100.0
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1920.6 1138 88.8
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1782.7 1143 82.0
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1693.7 1143 78.1
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1656.3 1142 76.7
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1647.9 1140 76.1
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1645.9 1142 75.4
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1633.6 1143 75.2
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1562.4 1142 72.2
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1520.8 1138 69.2
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1507.7 1137 69.1
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 0.0e+00 1460.7 1084 71.4
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1267.7 1226 57.5
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1266.9 1156 59.8
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1265.0 1149 59.8
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1263.4 1156 59.7
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1248.8 1165 57.8
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1239.6 1155 58.6
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1221.1 1153 57.2
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1218.4 1165 58.6
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1203.0 1155 55.8
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1197.2 1153 56.4
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1193.7 1152 56.8
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1188.7 1158 55.9
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1182.9 1155 56.5
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1181.4 1151 55.8
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1174.1 1143 55.7
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1170.6 1145 56.6
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1168.7 1152 54.2
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1145.2 1154 54.5
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1137.5 1150 54.8
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1133.2 1149 53.7
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1130.5 1149 53.7
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1124.8 1138 53.2
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1120.5 1159 53.1
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1112.1 1144 53.1
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1107.8 1144 53.5
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1107.0 1128 53.5
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1102.0 1146 52.4
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1079.3 1214 49.6
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 1.6e-311 1072.8 1155 51.7
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 2.0e-310 1069.3 1152 50.2
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 2.3e-306 1055.8 1153 51.3
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 5.7e-305 1051.2 1158 50.1
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 1.4e-303 1046.6 1101 51.2
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 2.0e-302 1042.7 1070 53.9
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 2.6e-302 1042.3 1136 49.2
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 7.7e-302 1040.8 1134 49.0
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 5.0e-301 1038.1 1093 52.6
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 6.3e-296 1021.1 1099 51.2
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 1.5e-294 1016.5 1153 48.7
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 2.2e-293 1012.7 1153 49.5
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 2.9e-293 1012.3 1145 49.8
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.7e-291 1005.7 1146 48.5
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 6.1e-291 1004.6 1147 49.1
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 3.3e-289 998.8 1162 49.1
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.7e-288 996.5 1148 49.1
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 2.2e-288 996.1 1153 48.9
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 5.5e-284 981.5 1124 48.6
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.8e-282 976.5 1141 48.6
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 1.2e-281 973.8 1229 46.4
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 7.5e-281 971.1 1151 47.5
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 7.5e-281 971.1 1149 47.3
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 9.1e-279 964.1 1144 47.2
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 6.5e-277 958.0 1137 47.4
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 2.5e-276 956.1 1149 46.6
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.5e-276 954.9 1047 52.1
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.2e-272 943.0 1145 46.0
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 2.8e-272 942.6 1132 46.5
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 4.1e-271 938.7 1135 45.9
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 1.1e-268 930.6 1144 46.2
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 1.9e-268 929.9 1149 45.8
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 2.8e-267 926.0 1145 46.2
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 6.1e-267 924.9 1145 46.1
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.0e-266 924.1 1152 45.6
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 4.0e-266 922.2 1149 46.0
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.8e-263 913.3 1151 44.9
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 3.9e-261 905.6 1175 45.4
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 2.1e-259 899.8 1009 48.5
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 3.6e-259 899.0 1103 47.7
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.0e-258 897.5 1023 47.5
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 4.9e-256 888.6 1131 45.1
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.5e-254 882.5 1142 45.6
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.7e-248 863.6 1132 44.1
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.7e-248 862.4 960 49.9
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.0e-245 854.4 1072 46.8
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.4e-239 833.2 1146 42.7
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 6.0e-238 828.6 891 50.8
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 6.2e-235 818.5 1131 43.0
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 2.7e-230 803.1 1065 43.9
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 6.9e-226 788.5 1154 40.4
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 4.4e-225 785.8 1140 40.8
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 1.9e-220 770.4 1142 42.0
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 4.5e-209 732.6 912 44.4
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 9.8e-164 582.0 1051 36.3
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 5.4e-138 496.5 1191 31.0
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 8.6e-128 462.6 1199 29.2
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.9e-122 444.9 650 40.8
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 8.1e-118 429.5 445 53.9
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 4.2e-114 417.2 511 46.0
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.2e-113 415.6 695 37.6
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 9.3e-106 389.4 437 49.9
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.9e-104 384.0 533 40.9
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.9e-99 367.1 440 47.0
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 8.7e-96 356.3 1133 27.8
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.3e-95 354.4 338 55.6
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 4.2e-90 337.4 438 46.1
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 5.9e-76 290.4 237 62.4
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 1.3e-70 272.7 1282 25.0
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.2e-66 256.9 196 67.9
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.3e-64 251.9 239 56.1
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 9.7e-63 246.5 286 49.3
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.8e-56 225.7 349 39.8
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 3.3e-55 221.5 316 46.8
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 2.8e-54 218.4 185 64.3
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.9e-51 208.4 155 68.4
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 2.8e-46 191.8 182 54.9
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 2.4e-45 188.7 137 73.0
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 3.5e-44 184.9 180 56.7
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.4e-40 172.9 157 54.1
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.7e-38 166.0 230 44.8
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 6.6e-35 154.1 93 82.8
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.7e-33 147.9 116 62.1
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 5.2e-32 144.4 131 55.7
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 2.0e-28 132.5 176 43.8
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.3e-27 129.8 115 53.9
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.7e-27 129.4 195 39.5
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 3.9e-27 128.3 96 69.8
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 9.5e-26 123.6 119 52.1
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 2.1e-25 122.5 152 45.4
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 2.1e-25 122.5 152 45.4
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.2e-23 116.7 122 50.8
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.0e-23 115.9 96 61.5
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.0e-23 115.9 96 61.5
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 1.3e-22 113.2 110 60.0
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 4.1e-21 108.2 73 72.6
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 2.7e-20 105.5 258 30.2
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 7.8e-20 104.0 59 84.7
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 3.9e-19 101.7 348 27.3
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 2.5e-18 99.0 127 41.7
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.8e-16 92.8 81 60.5
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 5.8e-15 87.8 143 40.6
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 7.5e-15 87.4 53 79.2
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 9.9e-15 87.0 90 45.6
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 2.9e-14 85.5 174 33.3
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 3.2e-13 82.0 75 49.3
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 4.6e-12 78.2 74 48.6
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.2e-09 70.1 64 56.2
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.6e-09 68.6 68 52.9
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.1e-08 67.0 76 51.3


User provided reference genes

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