Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 4.2e-138 495.0 302 100.0
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 6.5e-131 471.1 302 93.0
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.1e-117 427.2 303 82.8
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 4.2e-106 388.7 305 81.3
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.8e-102 375.9 302 75.2
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 4.8e-102 375.2 310 71.0
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.5e-100 368.6 320 70.9
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 7.7e-100 367.9 308 74.4
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 7.7e-100 367.9 324 74.7
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 6.5e-99 364.8 306 74.5
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 6.5e-99 364.8 313 74.1
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 6.5e-99 364.8 329 69.0
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.5e-98 362.8 303 74.9
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.2e-98 362.5 312 70.5
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 3.2e-98 362.5 297 73.7
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 1.2e-97 360.5 304 73.4
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.7e-97 358.6 319 71.2
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 6.1e-97 358.2 302 72.2
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 2.3e-96 356.3 316 73.1
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.3e-94 350.5 307 70.7
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 6.3e-94 348.2 312 72.4
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.4e-93 347.1 302 71.5
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.8e-93 346.7 315 67.6
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.8e-93 346.7 291 73.5
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.4e-93 346.3 321 70.4
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.4e-93 346.3 315 67.9
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.6e-92 343.6 319 70.5
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 5.9e-92 341.7 308 75.0
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 6.5e-91 338.2 309 73.1
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.5e-90 337.0 303 65.7
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.9e-90 336.7 300 71.3
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.2e-90 335.9 303 65.7
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 7.2e-90 334.7 300 75.3
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 7.2e-90 334.7 307 67.4
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.2e-89 334.0 310 71.9
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.6e-89 333.6 303 65.3
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.7e-89 332.8 304 67.8
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 2.7e-89 332.8 308 64.9
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 6.1e-89 331.6 314 63.4
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 8.0e-89 331.3 297 69.7
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.0e-88 330.9 313 70.9
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.3e-88 329.7 308 67.9
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.3e-88 329.7 308 67.9
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 4.0e-88 328.9 299 71.6
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 6.8e-88 328.2 313 70.6
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 6.8e-88 328.2 304 67.4
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.5e-87 327.0 327 64.2
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 3.4e-87 325.9 311 68.8
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 5.7e-87 325.1 297 70.0
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.4e-85 320.5 301 70.8
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 1.8e-85 320.1 311 71.1
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.1e-85 317.8 311 66.9
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 2.0e-84 316.6 303 64.7
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.5e-84 315.8 314 66.9
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 4.5e-84 315.5 304 67.4
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.0e-83 314.3 305 64.9
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.3e-83 313.9 301 65.8
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 1.7e-83 313.5 315 61.3
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 2.3e-83 313.2 316 64.6
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 2.3e-83 313.2 304 67.4
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 6.6e-83 311.6 302 66.9
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 3.3e-82 309.3 302 68.2
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 4.2e-82 308.9 302 65.2
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 4.2e-82 308.9 302 65.2
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 5.6e-82 308.5 300 70.3
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.6e-81 307.0 296 67.9
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 4.7e-81 305.4 304 65.1
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 6.1e-81 305.1 291 68.7
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.8e-80 303.5 306 65.4
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.0e-79 300.1 287 69.7
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.4e-79 298.9 315 61.0
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 5.7e-79 298.5 291 66.0
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 9.8e-79 297.7 302 65.2
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.2e-78 296.6 309 62.5
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 2.2e-78 296.6 314 67.5
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 8.3e-78 294.7 298 64.1
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.8e-77 293.5 284 58.5
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.8e-77 293.5 305 62.3
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 1.8e-77 293.5 351 58.4
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 5.4e-77 292.0 315 67.0
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.2e-76 290.8 299 57.5
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.2e-76 290.8 304 63.8
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.6e-76 290.4 303 62.0
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.5e-76 289.3 311 58.5
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 3.5e-76 289.3 311 66.9
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 3.5e-76 289.3 322 63.4
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 4.6e-76 288.9 293 69.3
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.0e-75 287.7 322 63.0
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 1.7e-75 287.0 305 61.6
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 2.3e-75 286.6 303 66.3
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 2.9e-75 286.2 302 65.9
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.9e-75 286.2 304 59.2
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 8.6e-75 284.6 302 63.9
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.5e-74 283.1 317 62.1
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 5.6e-74 282.0 307 61.2
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 5.6e-74 282.0 298 69.1
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 5.6e-74 282.0 298 69.1
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 5.6e-74 282.0 301 62.8
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.2e-73 280.8 301 66.8
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.7e-73 278.9 295 68.1
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 1.4e-72 277.3 314 59.6
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.8e-72 276.9 315 54.6
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 5.2e-72 275.4 302 65.6
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.4e-71 272.3 315 59.4
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.7e-70 270.4 310 61.6
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 2.9e-70 269.6 302 61.3
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 2.9e-70 269.6 302 61.3
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.9e-69 266.9 319 59.9
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 2.4e-69 266.5 326 56.4
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 3.2e-69 266.2 316 60.4
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 9.2e-69 264.6 408 47.8
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.2e-68 264.2 317 59.3
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 3.5e-68 262.7 312 59.6
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 4.6e-68 262.3 294 63.6
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 6.0e-68 261.9 252 64.7
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 6.0e-68 261.9 304 61.5
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.6e-65 253.8 317 57.1
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 2.8e-65 253.1 298 62.4
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 2.8e-65 253.1 297 55.2
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 4.7e-65 252.3 293 63.1
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 4.7e-65 252.3 316 51.9
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 3.1e-64 249.6 315 57.5
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 4.0e-64 249.2 303 58.1
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 2.0e-63 246.9 305 57.7
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 9.8e-63 244.6 306 59.5
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 3.7e-62 242.7 300 58.7
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.9e-61 240.4 307 59.6
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.9e-61 240.4 225 67.6
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 5.1e-59 232.3 295 56.6
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 5.1e-59 232.3 301 58.5
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 8.6e-59 231.5 296 55.4
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 2.5e-58 229.9 307 58.0
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 9.5e-58 228.0 303 56.4
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.2e-57 227.6 300 55.3
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 1.2e-57 227.6 308 57.1
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.2e-57 227.6 219 66.7
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 4.7e-57 225.7 299 55.5
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 5.2e-56 222.2 288 58.7
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 8.9e-56 221.5 318 54.1
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.9e-54 215.7 304 54.9
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 2.4e-53 213.4 235 68.5
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.4e-53 212.2 216 67.1
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 7.8e-52 208.4 297 53.2
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 7.8e-52 208.4 214 69.2
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 7.3e-50 201.8 219 68.9
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 3.6e-49 199.5 305 49.2
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.4e-48 196.8 213 63.8
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.1e-45 188.0 278 48.9
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 1.3e-43 181.0 243 57.6
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.7e-43 180.6 201 62.2
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 6.9e-40 168.7 140 61.4
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 2.9e-38 163.3 109 74.3
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 6.4e-38 162.2 131 76.3
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 6.2e-33 145.6 306 42.2
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 2.0e-31 140.6 281 49.1
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 9.9e-31 138.3 337 44.2
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 1.7e-30 137.5 106 62.3
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.2e-30 137.1 217 54.4
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 3.5e-28 129.8 315 44.4
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 6.7e-27 125.6 334 42.2
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 5.6e-26 122.5 85 74.1
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.6e-25 120.9 88 70.5
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 2.1e-25 120.6 87 71.3
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.8e-24 117.5 209 54.1
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.8e-24 117.5 103 62.1
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 2.0e-23 114.0 79 77.2
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 7.6e-23 112.1 78 76.9
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.0e-19 100.1 70 71.4
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.9e-19 99.8 213 39.9
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.1e-19 99.4 97 59.8
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 8.7e-19 98.6 62 71.0
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.9e-18 97.4 63 73.0
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 3.1e-16 90.1 81 60.5
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.3e-14 84.7 70 57.1
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.1e-13 81.6 103 53.4
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.3e-13 78.6 44 90.9
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 2.7e-12 77.0 86 55.8
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.5e-12 76.6 134 45.5
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 7.9e-12 75.5 285 43.2
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 3.9e-11 73.2 78 55.1
Sabra06G0076200 Salix brachista HOM05D003822 ORTHO05D349384 5.7e-10 69.3 73 53.4
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 6.9e-08 62.4 259 43.2
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.2e-07 61.6 100 46.0
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 1.0e-06 58.5 79 48.1
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 2.9e-06 57.0 46 67.4
Duzib170G0932 Durio zibethinus HOM05D003822 ORTHO05D004484 6.5e-06 55.8 31 83.9


User provided reference genes

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