Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 2.0e-82 308.9 145 100.0
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 3.1e-38 162.2 125 66.4
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 2.5e-32 142.5 122 61.5
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 3.3e-32 142.1 128 57.8
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 7.4e-32 141.0 128 57.8
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 9.6e-32 140.6 128 58.6
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 1.6e-31 139.8 128 57.0
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 3.1e-30 135.6 128 55.5
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 2.6e-29 132.5 139 55.4
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.8e-25 119.8 76 76.3
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 6.7e-25 117.9 124 52.4
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.1e-22 110.5 130 50.0
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.4e-22 110.2 142 45.8
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 5.3e-22 108.2 130 46.2
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 9.0e-22 107.5 125 49.6
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 2.0e-21 106.3 130 47.7
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 2.0e-21 106.3 133 44.4
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.6e-21 105.9 134 42.5
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 4.5e-21 105.1 133 46.6
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 5.8e-21 104.8 130 49.2
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 5.8e-21 104.8 120 50.8
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.0e-20 104.0 130 47.7
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.3e-20 103.6 165 38.2
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 2.2e-20 102.8 124 48.4
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 2.2e-20 102.8 124 47.6
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 3.8e-20 102.1 130 44.6
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 3.8e-20 102.1 130 43.8
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 4.9e-20 101.7 124 46.0
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 8.4e-20 100.9 137 46.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 8.4e-20 100.9 124 45.2
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 3.2e-19 99.0 125 45.6
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 3.2e-19 99.0 124 46.0
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 5.5e-19 98.2 130 43.1
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 7.1e-19 97.8 132 43.2
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.2e-18 97.1 124 47.6
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.2e-18 97.1 130 43.8
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.6e-18 96.7 124 46.0
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.1e-18 96.3 142 43.7
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.7e-18 95.9 125 43.2
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 3.5e-18 95.5 124 46.8
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 3.5e-18 95.5 124 46.8
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 3.5e-18 95.5 124 46.8
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 3.5e-18 95.5 124 44.4
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 3.5e-18 95.5 124 44.4
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 4.6e-18 95.1 140 41.4
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 7.9e-18 94.4 124 44.4
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 7.9e-18 94.4 124 46.8
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 7.9e-18 94.4 124 46.8
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 1.8e-17 93.2 124 43.5
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 2.3e-17 92.8 124 47.6
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.0e-17 92.4 124 45.2
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.0e-17 92.4 124 46.8
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 5.1e-17 91.7 149 39.6
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 6.7e-17 91.3 132 39.4
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.1e-16 90.5 124 43.5
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 1.5e-16 90.1 120 44.2
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.9e-16 89.7 134 43.3
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.5e-16 89.4 126 45.2
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.6e-15 86.7 117 43.6
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.2e-15 86.3 124 43.5
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 2.8e-15 85.9 146 35.6
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 4.8e-15 85.1 55 69.1
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.1e-14 84.0 138 38.4
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 1.4e-14 83.6 131 42.7
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.8e-14 83.2 141 40.4
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.8e-14 83.2 120 45.0
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 3.1e-14 82.4 131 39.7
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 9.0e-14 80.9 124 38.7
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.5e-13 80.1 120 40.8
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.5e-13 80.1 123 43.1
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 2.0e-13 79.7 55 70.9
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.6e-13 79.3 158 35.4
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 3.2e-11 72.4 120 40.0
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.2e-11 72.0 115 39.1
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 5.5e-11 71.6 134 38.1
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.6e-10 70.1 109 41.3
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.6e-10 70.1 44 77.3
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 2.7e-10 69.3 69 52.2
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 1.0e-09 67.4 150 34.0
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 7.4e-08 61.2 65 46.2
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.8e-07 59.3 78 43.6
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 2.8e-07 59.3 41 70.7
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.1e-06 57.4 51 52.9
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.4e-06 56.2 40 70.0
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 9.1e-06 54.3 78 42.3


User provided reference genes

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