Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G344600 Glycine max HOM05D006244 ORTHO05D007401 7.6e-49 196.8 98 100.0
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 1.5e-33 146.0 85 85.9
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 6.1e-30 134.0 122 63.1
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 9.1e-26 120.2 68 82.4
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 2.0e-25 119.0 122 55.7
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 3.5e-25 118.2 122 54.9
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 8.5e-24 113.6 68 79.4
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 1.5e-23 112.8 68 79.4
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 1.9e-23 112.5 68 79.4
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 1.6e-22 109.4 110 58.2
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 2.6e-20 102.1 122 49.2
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 4.4e-20 101.3 67 71.6
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 7.4e-20 100.5 67 71.6
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 9.7e-20 100.1 68 69.1
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 2.2e-19 99.0 110 51.8
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 2.8e-19 98.6 68 66.2
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 1.4e-18 96.3 68 66.2
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 1.8e-18 95.9 64 70.3
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 5.3e-18 94.4 68 66.2
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 5.3e-18 94.4 68 66.2
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 5.3e-18 94.4 68 66.2
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 7.0e-18 94.0 122 45.9
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 1.2e-17 93.2 89 53.9
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 1.6e-17 92.8 70 64.3
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 2.6e-17 92.0 63 66.7
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 2.6e-17 92.0 68 61.8
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 3.5e-17 91.7 125 43.2
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 3.5e-17 91.7 71 62.0
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 5.9e-17 90.9 69 65.2
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 7.7e-17 90.5 69 65.2
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 1.0e-16 90.1 122 44.3
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.0e-16 90.1 125 42.4
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 1.0e-16 90.1 72 58.3
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 1.3e-16 89.7 68 58.8
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 1.3e-16 89.7 125 42.4
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 1.7e-16 89.4 122 41.8
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 2.2e-16 89.0 67 61.2
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 2.2e-16 89.0 67 61.2
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 2.2e-16 89.0 68 61.8
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 2.9e-16 88.6 122 44.3
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 2.9e-16 88.6 72 58.3
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 2.9e-16 88.6 68 61.8
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 3.8e-16 88.2 68 60.3
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 8.5e-16 87.0 83 53.0
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 1.5e-15 86.3 71 57.7
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 1.5e-15 86.3 122 40.2
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 1.5e-15 86.3 68 58.8
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 1.9e-15 85.9 68 58.8
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 1.9e-15 85.9 68 58.8
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 1.9e-15 85.9 125 40.8
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 2.5e-15 85.5 68 57.4
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 2.5e-15 85.5 66 57.6
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 4.2e-15 84.7 76 57.9
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 5.5e-15 84.3 68 60.3
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 7.2e-15 84.0 110 46.4
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 9.4e-15 83.6 63 61.9
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 9.4e-15 83.6 68 58.8
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 1.2e-14 83.2 125 40.8
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 1.6e-14 82.8 68 54.4
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 2.7e-14 82.0 71 53.5
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 2.7e-14 82.0 63 58.7
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 2.7e-14 82.0 58 65.5
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 2.7e-14 82.0 68 55.9
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 2.7e-14 82.0 58 65.5
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 3.6e-14 81.6 63 61.9
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 3.6e-14 81.6 68 54.4
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 3.6e-14 81.6 76 56.6
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 6.1e-14 80.9 135 37.8
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 6.1e-14 80.9 68 54.4
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 6.1e-14 80.9 129 38.8
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 8.0e-14 80.5 60 61.7
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 1.0e-13 80.1 58 60.3
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 1.0e-13 80.1 58 62.1
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 1.4e-13 79.7 68 54.4
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 1.8e-13 79.3 58 60.3
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 1.8e-13 79.3 68 55.9
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 3.0e-13 78.6 58 62.1
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 3.0e-13 78.6 58 62.1
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 4.0e-13 78.2 58 62.1
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 4.0e-13 78.2 58 62.1
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 5.2e-13 77.8 65 58.5
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 6.8e-13 77.4 58 60.3
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 8.8e-13 77.0 64 57.8
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 8.8e-13 77.0 65 58.5
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 1.2e-12 76.6 64 57.8
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 1.5e-12 76.3 107 43.9
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 2.6e-12 75.5 60 58.3
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 4.4e-12 74.7 67 53.7
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 4.4e-12 74.7 65 55.4
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 5.7e-12 74.3 57 56.1
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 5.7e-12 74.3 68 51.5
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 7.5e-12 73.9 54 61.1
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 7.5e-12 73.9 69 52.2
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 7.5e-12 73.9 51 62.7
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 1.3e-11 73.2 68 54.4
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 1.3e-11 73.2 63 54.0
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 3.7e-11 71.6 56 58.9
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 1.1e-10 70.1 67 46.3
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 2.4e-10 68.9 66 53.0


User provided reference genes

Program Settings