Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 1.1e-60 236.5 125 100.0
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 2.7e-51 205.3 121 87.6
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 4.1e-39 164.9 122 70.5
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.5e-38 161.8 121 71.1
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 3.5e-38 161.8 122 70.5
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 5.9e-38 161.0 122 70.5
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.0e-37 160.2 127 69.3
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 3.8e-37 158.3 124 69.4
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 6.5e-37 157.5 122 65.6
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.1e-36 156.8 122 64.8
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 7.2e-36 154.1 122 67.2
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 9.5e-36 153.7 122 69.7
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 2.6e-33 145.6 121 62.8
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 4.4e-33 144.8 121 62.0
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 6.3e-32 141.0 122 59.0
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 8.3e-32 140.6 122 59.0
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 7.0e-31 137.5 122 63.1
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 9.2e-31 137.1 120 57.5
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.2e-30 136.7 122 62.3
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 3.5e-30 135.2 123 56.1
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 7.8e-30 134.0 123 54.5
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 7.8e-30 134.0 124 57.3
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-29 133.3 122 62.3
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 2.9e-29 132.1 123 56.1
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 5.0e-29 131.3 122 56.6
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 6.6e-29 131.0 122 61.5
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 5.6e-28 127.9 121 54.5
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 9.5e-28 127.1 122 59.0
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.6e-27 126.3 121 53.7
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.8e-27 125.6 124 52.4
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 4.7e-27 124.8 120 54.2
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 8.0e-27 124.0 123 52.0
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.0e-26 123.6 125 52.0
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 4.9e-24 114.8 121 49.6
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 6.4e-24 114.4 120 51.7
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 8.3e-24 114.0 122 48.4
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 9.2e-23 110.5 122 47.5
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.2e-22 110.2 121 52.1
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.5e-22 108.6 120 46.7
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.7e-21 106.3 120 43.3
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 2.3e-21 105.9 91 62.6
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 3.0e-21 105.5 123 42.3
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 3.9e-21 105.1 121 48.8
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 3.9e-21 105.1 121 49.6
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 6.6e-21 104.4 114 47.4
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 6.6e-21 104.4 121 43.8
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.5e-20 103.2 153 39.9
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 3.3e-20 102.1 121 46.3
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 4.3e-20 101.7 122 41.8
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.3e-20 101.7 133 41.4
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.3e-20 101.7 128 40.6
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 4.3e-20 101.7 121 43.0
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 5.6e-20 101.3 121 43.8
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 7.3e-20 100.9 127 44.9
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 7.3e-20 100.9 120 45.8
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 7.3e-20 100.9 118 39.8
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.6e-19 99.8 121 43.0
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 1.6e-19 99.8 121 43.8
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.6e-19 99.8 123 43.1
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 3.6e-19 98.6 119 43.7
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 4.7e-19 98.2 118 42.4
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 4.7e-19 98.2 110 41.8
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 6.2e-19 97.8 116 44.0
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 6.2e-19 97.8 121 43.0
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-18 96.7 127 40.9
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.8e-18 96.3 119 44.5
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 3.1e-18 95.5 124 39.5
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.0e-18 95.1 121 44.6
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.0e-18 95.1 126 42.9
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.0e-18 95.1 121 40.5
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 5.2e-18 94.7 114 41.2
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 6.8e-18 94.4 117 39.3
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 8.9e-18 94.0 114 40.4
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.2e-17 93.6 105 41.0
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 1.5e-17 93.2 114 41.2
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.5e-17 93.2 117 40.2
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.5e-17 93.2 113 42.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 2.0e-17 92.8 125 40.8
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 2.0e-17 92.8 107 46.7
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.4e-17 92.0 109 44.0
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.4e-17 91.7 107 44.9
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 4.4e-17 91.7 114 39.5
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 5.8e-17 91.3 114 39.5
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 5.8e-17 91.3 124 41.9
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 7.5e-17 90.9 86 53.5
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 7.5e-17 90.9 124 41.9
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 7.5e-17 90.9 124 41.9
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 9.8e-17 90.5 125 43.2
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 9.8e-17 90.5 123 43.9
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 1.3e-16 90.1 114 37.7
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.3e-16 90.1 115 40.0
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.7e-16 88.6 121 41.3
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 3.7e-16 88.6 114 42.1
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.9e-16 88.2 126 42.1
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 6.4e-16 87.8 120 37.5
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.4e-15 86.7 102 43.1
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 1.9e-15 86.3 118 38.1
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 3.2e-15 85.5 71 63.4
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 4.1e-15 85.1 98 46.9
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 4.1e-15 85.1 91 45.1
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 5.4e-15 84.7 119 40.3
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.3e-13 80.1 121 37.2
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.3e-13 80.1 107 42.1
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.3e-13 80.1 119 38.7
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.1e-12 77.0 115 33.0
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.9e-12 76.3 116 37.9
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 3.3e-12 75.5 88 42.0
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 9.5e-12 73.9 126 40.5
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.5e-12 73.9 104 38.5
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 9.5e-12 73.9 131 32.8
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.6e-11 72.0 109 35.8
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 3.6e-11 72.0 121 36.4
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 6.2e-11 71.2 96 46.9
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 8.9e-10 67.4 59 55.9
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 1.2e-09 67.0 119 36.1
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 6.4e-08 61.2 87 36.8
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-07 60.1 86 39.5
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 4.1e-07 58.5 86 41.9
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.6e-06 56.6 68 38.2
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 3.5e-06 55.5 54 59.3
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.6e-06 55.1 87 33.3
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.0e-06 54.7 84 38.1


User provided reference genes

Program Settings