Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 7.6e-203 710.3 361 100.0
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 1.0e-178 630.2 361 88.1
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.1e-174 616.7 361 86.4
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 1.6e-173 612.8 361 86.4
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.1e-173 612.5 362 85.9
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 6.2e-173 610.9 361 86.4
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.9e-166 589.3 363 83.7
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 2.2e-165 585.9 353 83.3
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 1.5e-163 579.7 362 82.0
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 3.6e-160 568.5 355 83.4
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 1.0e-159 567.0 359 79.4
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 2.5e-153 545.8 358 74.6
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 2.3e-151 539.3 358 74.3
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 6.7e-151 537.7 356 74.7
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 8.8e-151 537.3 355 74.9
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 2.6e-150 535.8 359 75.5
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.7e-149 533.1 360 74.4
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 8.2e-149 530.8 362 74.3
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 1.6e-147 526.6 357 73.4
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 3.5e-147 525.4 358 73.5
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.0e-146 523.9 361 72.0
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.7e-146 523.1 362 73.2
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 1.7e-146 523.1 356 73.3
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 2.9e-146 522.3 356 73.6
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 5.0e-146 521.5 356 75.3
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 3.2e-145 518.8 358 73.2
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 1.6e-144 516.5 356 74.2
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 2.1e-144 516.2 362 72.7
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 2.7e-144 515.8 362 72.7
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.1e-144 514.6 356 74.4
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.1e-144 514.6 356 74.4
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 8.0e-144 514.2 358 71.5
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 1.0e-143 513.8 357 72.3
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 1.4e-143 513.5 356 73.0
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.4e-143 513.5 361 70.6
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 2.3e-143 512.7 358 71.2
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 3.0e-143 512.3 388 68.0
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 4.0e-143 511.9 358 72.3
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 6.7e-143 511.1 366 73.0
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 5.7e-142 508.1 358 73.2
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 9.7e-142 507.3 356 71.1
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 2.8e-141 505.8 362 70.2
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 3.7e-141 505.4 359 71.0
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.1e-140 503.8 362 70.7
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 1.1e-140 503.8 356 72.8
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 3.1e-140 502.3 351 75.2
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 7.0e-140 501.1 358 69.0
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 7.0e-140 501.1 356 70.8
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 9.1e-140 500.7 356 70.8
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 9.1e-140 500.7 361 71.7
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 1.2e-139 500.4 362 69.6
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 1.2e-139 500.4 359 72.7
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 2.7e-139 499.2 356 70.8
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 2.7e-139 499.2 356 69.9
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 7.7e-139 497.7 357 70.3
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 7.7e-139 497.7 362 69.9
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 1.5e-137 493.4 356 70.2
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 5.5e-137 491.5 356 69.9
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 2.1e-136 489.6 356 69.1
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 4.7e-136 488.4 362 69.3
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 4.7e-136 488.4 358 68.2
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 1.2e-134 483.8 359 69.4
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.0e-134 483.0 362 68.2
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 2.6e-134 482.6 356 69.9
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 3.4e-134 482.3 362 68.2
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 9.8e-134 480.7 362 68.2
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 1.3e-133 480.3 362 68.2
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 1.1e-132 477.2 362 67.7
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 3.1e-132 475.7 391 63.7
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 5.4e-132 474.9 315 76.2
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 7.0e-132 474.6 362 67.4
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 1.3e-130 470.3 356 66.3
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 4.7e-128 461.8 362 63.0
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.0e-127 460.7 358 64.5
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.2e-126 457.2 361 67.3
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.5e-126 456.8 355 67.0
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 9.8e-126 454.1 355 65.9
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 9.8e-126 454.1 355 66.2
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 5.4e-124 448.4 362 65.7
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 5.4e-124 448.4 354 66.1
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 5.4e-124 448.4 477 54.1
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 1.5e-121 440.3 354 63.8
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 2.5e-121 439.5 359 60.4
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 3.6e-120 435.6 362 63.8
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 3.0e-119 432.6 373 61.9
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 3.4e-118 429.1 377 61.0
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 2.2e-117 426.4 358 60.6
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 6.4e-109 398.3 355 60.0
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 5.0e-106 388.7 356 55.1
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 8.3e-101 371.3 258 72.9
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.9e-100 370.2 257 71.2
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 1.9e-97 360.1 362 55.8
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.4e-95 354.0 252 69.8
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 8.9e-95 351.3 350 49.4
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 9.9e-94 347.8 249 69.9
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 3.3e-89 332.8 297 61.3
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 2.6e-86 323.2 358 46.4
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 4.9e-85 318.9 377 45.6
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.7e-83 313.2 355 47.3
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.0e-82 311.2 361 48.2
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 8.7e-82 308.1 362 49.7
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 6.4e-77 292.0 201 72.6
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 6.4e-77 292.0 343 45.5
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 7.1e-76 288.5 343 46.4
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 2.1e-72 276.9 203 66.0
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 3.8e-69 266.2 347 40.6
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.8e-66 257.3 350 42.3
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.1e-64 250.4 349 40.1
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 7.4e-49 198.7 213 54.9
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.9e-46 189.1 147 67.3
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 5.9e-46 189.1 148 65.5
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 1.7e-40 171.0 152 62.5
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 3.8e-37 159.8 134 67.9
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 4.7e-35 152.9 183 50.8
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 2.8e-32 143.7 357 30.8
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 6.3e-32 142.5 100 75.0
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 6.3e-32 142.5 99 70.7
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 2.4e-31 140.6 402 29.6
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 3.1e-31 140.2 97 74.2
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 2.2e-29 134.0 98 69.4
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.2e-27 128.3 126 54.8
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 3.6e-27 126.7 117 62.4
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 6.7e-26 122.5 88 68.2
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 6.3e-24 115.9 92 65.2
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 1.8e-18 97.8 106 50.9
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 1.8e-18 97.8 106 50.9
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.5e-17 94.7 84 60.7
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.4e-17 93.6 83 61.4
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 8.6e-13 79.0 82 54.9
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.1e-12 78.6 93 50.5
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 1.9e-12 77.8 51 70.6


User provided reference genes

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