Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 9.5e-251 869.8 458 100.0
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 4.8e-210 734.6 458 87.1
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.1e-177 627.1 456 77.2
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 6.7e-164 581.3 457 73.3
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 6.1e-141 505.0 461 64.4
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 2.8e-138 496.1 463 65.0
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 4.1e-129 465.7 442 63.6
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 3.9e-127 459.1 507 57.4
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 8.6e-119 431.4 446 59.6
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 7.3e-118 428.3 448 58.5
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 1.9e-110 403.7 450 54.2
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.7e-104 383.3 444 52.5
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.9e-102 377.1 455 52.3
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 1.6e-101 374.0 339 64.3
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 2.1e-101 373.6 476 52.1
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 6.2e-101 372.1 440 51.6
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.1e-100 371.3 468 51.9
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.4e-100 370.2 470 50.0
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 4.0e-100 369.4 464 51.1
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 9.0e-100 368.2 455 50.8
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 5.8e-99 365.5 463 51.2
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 7.6e-99 365.2 456 51.8
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 2.2e-98 363.6 448 50.7
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 4.9e-98 362.5 441 51.0
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 6.4e-98 362.1 458 50.7
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 2.1e-96 357.1 407 56.5
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 3.5e-96 356.3 401 54.9
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 7.8e-96 355.1 472 51.5
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.0e-95 353.2 474 49.6
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 6.6e-95 352.1 455 50.5
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 5.6e-94 349.0 474 49.4
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.3e-93 347.8 429 50.6
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 4.8e-93 345.9 450 49.3
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 5.8e-91 339.0 467 47.3
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 8.4e-90 335.1 385 54.8
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.1e-89 334.7 470 48.5
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 7.1e-89 332.0 447 50.3
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 1.6e-88 330.9 466 48.1
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 2.1e-88 330.5 432 50.7
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 2.7e-88 330.1 401 50.9
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 3.5e-88 329.7 504 45.8
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.3e-87 327.8 483 46.4
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 5.1e-87 325.9 430 48.8
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 7.4e-86 322.0 418 52.4
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.4e-84 317.8 410 51.5
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.5e-83 314.3 388 51.8
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.0e-83 313.9 454 49.1
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.6e-83 313.5 380 52.6
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 7.6e-83 312.0 459 46.8
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.2e-80 304.7 406 48.5
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.7e-80 303.5 432 48.4
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 3.9e-79 299.7 459 44.2
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 6.7e-79 298.9 302 56.3
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 2.5e-78 297.0 470 46.4
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 2.5e-78 297.0 459 43.6
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 5.6e-78 295.8 453 45.0
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 7.4e-78 295.4 457 45.7
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 7.4e-78 295.4 450 44.7
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 2.1e-77 293.9 459 46.2
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.4e-76 291.2 463 44.3
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 3.1e-76 290.0 459 44.4
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 1.2e-75 288.1 457 43.1
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 3.4e-75 286.6 441 45.1
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.0e-74 285.0 413 46.7
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.7e-74 284.3 456 45.0
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 8.4e-74 282.0 476 41.0
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.2e-73 279.6 459 43.4
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.2e-73 279.6 459 43.4
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 9.3e-73 278.5 446 46.0
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 2.7e-72 276.9 481 41.4
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 3.9e-71 273.1 485 41.6
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 2.5e-70 270.4 449 41.9
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 7.4e-70 268.9 372 46.8
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.6e-69 267.7 356 50.3
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 4.8e-69 266.2 439 42.8
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 8.2e-69 265.4 421 43.2
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 5.3e-68 262.7 456 41.2
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 6.9e-68 262.3 463 43.2
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.2e-67 261.5 466 41.4
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 2.0e-67 260.8 463 41.3
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 4.5e-67 259.6 466 40.8
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 2.9e-66 256.9 464 42.0
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 6.5e-66 255.8 436 41.7
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.5e-65 253.8 454 42.5
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 3.2e-65 253.4 367 45.2
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.2e-64 251.5 451 41.2
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 6.1e-64 249.2 457 40.3
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 3.0e-63 246.9 456 41.0
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 8.8e-63 245.4 443 41.5
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.5e-62 244.6 452 41.6
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.3e-62 243.0 477 40.0
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 7.4e-62 242.3 496 39.3
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.8e-61 240.4 441 39.9
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 3.4e-59 233.4 459 39.0
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 5.9e-59 232.6 449 39.0
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.0e-58 231.9 301 50.8
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 1.3e-58 231.5 455 38.9
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.9e-58 230.3 448 40.2
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 3.8e-58 229.9 425 41.2
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.9e-57 227.6 385 41.0
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 9.4e-57 225.3 342 44.4
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.6e-56 224.6 437 38.9
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 3.6e-56 223.4 438 39.0
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 3.6e-56 223.4 279 48.7
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-53 214.9 213 58.2
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 1.1e-52 211.8 425 39.8
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 3.4e-51 206.8 204 55.9
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 2.9e-50 203.8 418 39.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.5e-49 200.7 380 40.0
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 6.1e-48 196.1 307 46.3
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.4e-47 194.9 292 45.9
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 3.0e-47 193.7 425 36.7
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 8.8e-47 192.2 237 52.7
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 2.8e-45 187.2 439 37.8
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 2.8e-45 187.2 439 37.8
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.8e-44 184.5 308 43.8
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 2.6e-43 180.6 407 37.3
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.3e-42 178.3 470 33.4
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.1e-41 175.3 341 41.6
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 1.9e-41 174.5 171 55.0
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.1e-40 171.0 143 63.6
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 6.1e-40 169.5 310 41.3
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.8e-37 160.6 151 60.3
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 9.1e-36 155.6 221 47.5
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.0e-34 152.1 306 36.9
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.3e-26 125.2 150 50.7
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 1.3e-26 125.2 490 29.0
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 2.6e-22 110.9 183 42.6
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 7.5e-22 109.4 139 50.4
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 7.8e-19 99.4 154 46.8
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.3e-18 98.6 154 45.5
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.1e-17 95.5 242 33.1
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 3.2e-12 77.4 87 55.2
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 1.1e-09 68.9 130 33.8
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 5.2e-07 60.1 104 38.5
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 7.5e-06 56.2 66 47.0
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 7.5e-06 56.2 110 36.4


User provided reference genes

Program Settings