Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 4.7e-136 488.0 277 100.0
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.5e-134 483.0 277 98.6
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.0e-130 470.3 277 95.7
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.5e-129 466.5 277 93.9
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.8e-127 459.5 301 89.0
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.5e-126 456.4 277 92.1
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 91.0
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 2.2e-125 452.6 277 92.1
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 88.8
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 91.3
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 89.5
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 4.9e-125 451.4 277 89.5
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 89.5
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 89.5
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 88.1
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 7.0e-124 447.6 277 88.8
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 88.1
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 88.1
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 2.0e-123 446.0 277 88.4
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 88.1
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 87.0
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 87.7
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 87.7
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 87.7
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 87.7
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 87.4
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 86.6
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 87.4
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 87.4
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 87.4
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 87.4
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 88.4
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 87.0
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 87.0
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 86.3
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 87.0
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.0
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 86.6
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 85.6
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 86.3
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 87.0
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 2.8e-120 435.6 276 87.7
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 86.3
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 85.9
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 85.9
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 86.3
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 87.7
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 85.6
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 85.2
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 84.5
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 84.8
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.2e-118 430.3 276 85.9
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 85.6
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 86.3
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 87.4
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 4.4e-118 428.3 277 85.2
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 7.5e-118 427.6 274 83.9
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 7.5e-118 427.6 277 82.7
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.8e-118 427.2 320 78.1
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 84.8
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 2.9e-117 425.6 274 83.6
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 8.3e-117 424.1 261 88.9
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.1e-116 423.7 277 81.9
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.1e-116 423.7 278 84.9
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 3.2e-116 422.2 283 82.3
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 3.2e-116 422.2 277 85.6
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 5.4e-116 421.4 277 83.0
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.2e-115 420.2 278 82.7
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 2.7e-115 419.1 277 81.2
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 7.8e-115 417.5 321 73.8
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 3.0e-114 415.6 277 85.9
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 5.0e-114 414.8 275 82.2
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 6.6e-114 414.5 277 79.8
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.9e-113 412.9 275 84.4
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 3.3e-113 412.1 275 82.2
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 3.3e-113 412.1 275 82.2
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 9.5e-113 410.6 278 83.1
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.6e-112 408.7 261 85.1
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.6e-112 408.7 261 85.1
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 6.2e-112 407.9 280 81.4
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.2e-110 403.7 318 71.1
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.2e-110 403.7 277 82.3
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.5e-110 403.3 274 82.1
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.5e-110 403.3 278 79.9
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 3.4e-110 402.1 277 80.9
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.7e-109 399.8 270 83.0
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 2.2e-109 399.4 273 81.3
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 2.9e-109 399.1 296 74.3
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.4e-108 396.7 278 81.3
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 3.2e-108 395.6 318 68.6
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 3.2e-108 395.6 255 87.5
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.7e-107 392.5 260 85.4
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 2.3e-106 389.4 272 81.2
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.3e-106 389.4 278 77.0
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 3.0e-106 389.0 277 77.6
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.1e-106 388.3 269 75.8
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 8.6e-106 387.5 271 80.8
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.1e-105 387.1 274 73.4
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.9e-105 386.3 256 82.4
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 7.3e-105 384.4 331 71.9
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.6e-104 382.1 256 82.4
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.6e-102 375.9 275 77.8
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.4e-102 375.6 277 76.9
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.8e-102 374.8 345 61.2
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 4.9e-101 371.7 282 75.9
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.2e-99 367.1 230 88.7
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.3e-98 362.8 230 84.8
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.2e-96 357.1 222 89.2
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 3.4e-94 349.0 222 87.4
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.6e-91 340.1 250 79.2
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.6e-91 340.1 250 79.2
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 6.0e-91 338.2 278 64.0
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 6.6e-90 334.7 268 70.5
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 8.7e-90 334.3 275 68.7
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 2.8e-88 329.3 224 83.0
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.4e-87 327.0 277 64.6
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 9.0e-87 324.3 274 70.4
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 9.0e-87 324.3 314 65.3
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.9e-86 320.9 274 70.1
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 4.9e-85 318.5 281 66.5
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 2.4e-84 316.2 284 65.8
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 1.8e-71 273.5 188 84.0
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.8e-71 273.5 258 60.9
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 4.6e-67 258.8 282 56.0
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 6.7e-66 255.0 274 52.9
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 4.2e-60 235.7 155 74.8
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 4.6e-59 232.3 145 90.3
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 3.9e-58 229.2 181 76.2
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.1e-55 221.1 129 86.0
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 6.9e-55 218.4 138 82.6
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.0e-50 204.5 132 80.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.0e-45 185.7 299 43.1
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 6.1e-43 178.7 97 94.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 6.1e-43 178.7 106 87.7
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 8.2e-40 168.3 90 94.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 1.6e-35 154.1 84 91.7
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.7e-34 148.7 152 57.2
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.1e-28 131.3 74 89.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.1e-28 131.3 74 89.2
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.5e-28 131.0 80 78.8
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.2e-28 129.8 80 81.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 2.7e-22 110.2 264 35.6
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 2.5e-20 103.6 158 47.5
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 8.0e-19 98.6 149 48.3
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.4e-18 97.8 156 42.3
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.8e-18 95.5 71 84.5
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-17 94.0 102 53.9
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 3.4e-17 93.2 57 78.9
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 9.8e-17 91.7 147 40.1
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 9.8e-17 91.7 157 42.7
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.2e-16 90.5 71 77.5
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.8e-16 90.1 97 60.8
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 8.3e-16 88.6 160 40.0
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.9e-14 82.4 159 34.6
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.3e-13 80.5 69 66.7
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 3.8e-13 79.7 46 78.3
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.6e-12 75.9 44 84.1
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.6e-12 75.9 157 40.8
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.6e-11 74.3 43 83.7
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.8e-11 73.6 163 36.8
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 5.2e-10 69.3 248 33.5
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-07 61.6 140 41.4
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 5.4e-07 59.3 38 76.3


User provided reference genes

Program Settings