Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G340400 Glycine max HOM05D000187 ORTHO05D000926 4.2e-53 211.1 106 100.0
TPR.G35026 Trifolium pratense HOM05D000187 ORTHO05D000926 6.8e-19 97.4 52 84.6
Ca_21027_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000926 9.8e-18 93.6 47 89.4
Lj3g0024503 Lotus japonicus HOM05D000187 ORTHO05D000926 9.8e-18 93.6 47 89.4
Psat7g212280 Pisum sativum HOM05D000187 ORTHO05D000926 2.2e-17 92.4 47 87.2
Medtr4g065670 Medicago truncatula HOM05D000187 ORTHO05D000926 2.9e-17 92.0 47 85.1
arahy.Tifrunner.gnm1.ann1.GU2J6I Arachis hypogaea HOM05D000187 ORTHO05D000926 8.3e-17 90.5 49 85.7
arahy.Tifrunner.gnm1.ann1.JJ7D5C Arachis hypogaea HOM05D000187 ORTHO05D000926 8.3e-17 90.5 49 85.7
Glyma.11G132700 Glycine max HOM05D000187 ORTHO05D000926 1.1e-16 90.1 47 85.1
Phvul.011G058800 Phaseolus vulgaris HOM05D000187 ORTHO05D000926 1.9e-16 89.4 47 83.0
Glyma.12G057100 Glycine max HOM05D000187 ORTHO05D000926 2.4e-16 89.0 47 83.0
VMungo1127G0733 Vigna mungo HOM05D000187 ORTHO05D000926 2.4e-16 89.0 47 83.0
Lalb_Chr03g0026301 Lupinus albus HOM05D000187 ORTHO05D000926 3.2e-16 88.6 47 83.0
Lalb_Chr19g0138131 Lupinus albus HOM05D000187 ORTHO05D000926 7.1e-16 87.4 47 80.9
CANSAT54G0040 Cannabis sativa HOM05D000187 ORTHO05D000926 2.1e-15 85.9 47 80.9
QL01p005123 Quercus lobata HOM05D000187 ORTHO05D000926 2.1e-15 85.9 47 80.9
Haze_23114 Corylus avellana HOM05D000187 ORTHO05D000926 6.0e-15 84.3 47 78.7
Haze_23117 Corylus avellana HOM05D000187 ORTHO05D000926 6.0e-15 84.3 47 78.7
COL.COLO4_00064 Corchorus olitorius HOM05D000187 ORTHO05D000926 1.3e-14 83.2 48 75.0
Ciclev10016714m.g Citrus clementina HOM05D000187 ORTHO05D000926 3.0e-14 82.0 47 74.5
Duzib170G0055 Durio zibethinus HOM05D000187 ORTHO05D000926 3.0e-14 82.0 67 59.7
VMungo1080G0637 Vigna mungo HOM05D000187 ORTHO05D000926 3.0e-14 82.0 41 90.2
Gohir.D08G023900 Gossypium hirsutum HOM05D000187 ORTHO05D000926 3.9e-14 81.6 47 74.5
Gorai.004G019200 Gossypium raimondii HOM05D000187 ORTHO05D000926 3.9e-14 81.6 47 74.5
Thecc.09G229500 Theobroma cacao HOM05D000187 ORTHO05D000926 3.9e-14 81.6 67 59.7
Atru.chr3.2611 Acer truncatum HOM05D000187 ORTHO05D000926 5.1e-14 81.3 48 70.8
Manes.14G001800 Manihot esculenta HOM05D000187 ORTHO05D000926 5.1e-14 81.3 47 72.3
ClCG03G013370 Citrullus lanatus HOM05D000187 ORTHO05D000926 8.6e-14 80.5 69 58.0
Gohir.A05G068700 Gossypium hirsutum HOM05D000187 ORTHO05D000926 1.1e-13 80.1 64 59.4
Gohir.D05G071700 Gossypium hirsutum HOM05D000187 ORTHO05D000926 1.1e-13 80.1 64 59.4
Gorai.009G072700 Gossypium raimondii HOM05D000187 ORTHO05D000926 1.1e-13 80.1 64 59.4
MELO3C029471.2 Cucumis melo HOM05D000187 ORTHO05D000926 2.5e-13 79.0 82 52.4
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 2.5e-13 79.0 47 72.3
MD03G1178200 Malus domestica HOM05D000187 ORTHO05D000926 3.3e-13 78.6 47 74.5
Manes.06G165800 Manihot esculenta HOM05D000187 ORTHO05D000926 3.3e-13 78.6 47 72.3
Gohir.A08G013500 Gossypium hirsutum HOM05D000187 ORTHO05D000926 5.6e-13 77.8 47 72.3
MD11G1198000 Malus domestica HOM05D000187 ORTHO05D000926 5.6e-13 77.8 47 74.5
Prupe.4G244600 Prunus persica HOM05D000187 ORTHO05D000926 5.6e-13 77.8 47 74.5
Phvul.L009743 Phaseolus vulgaris HOM05D000187 ORTHO05D000926 7.3e-13 77.4 41 87.8
Potri.001G019600 Populus trichocarpa HOM05D000187 ORTHO05D000926 1.6e-12 76.3 47 70.2
Sabra01G0013900 Salix brachista HOM05D000187 ORTHO05D000926 1.6e-12 76.3 47 70.2
FAN11G1439 Fragaria x ananassa HOM05D000187 ORTHO05D000926 2.1e-12 75.9 66 57.6
Sabra03G0151200 Salix brachista HOM05D000187 ORTHO05D000926 2.1e-12 75.9 47 68.1
Duzib168G1851 Durio zibethinus HOM05D000187 ORTHO05D000926 3.6e-12 75.1 67 58.2
RcHm_v2.0_Chr5g0051621 Rosa chinensis HOM05D000187 ORTHO05D000926 6.2e-12 74.3 47 72.3
GSVIVG01025294001 Vitis vinifera HOM05D000187 ORTHO05D000926 6.2e-12 74.3 47 66.0
THA.LOC104804982 Tarenaya hassleriana HOM05D000187 ORTHO05D000926 8.1e-12 73.9 47 63.8
FvH4_3g29040 Fragaria vesca HOM05D000187 ORTHO05D000926 1.4e-11 73.2 47 70.2
FAN21G0783 Fragaria x ananassa HOM05D000187 ORTHO05D000926 1.4e-11 73.2 47 70.2
Potri.003G204500 Populus trichocarpa HOM05D000187 ORTHO05D000926 1.4e-11 73.2 47 66.0
Actinidia16321 Actinidia chinensis HOM05D000187 ORTHO05D000926 2.3e-11 72.4 49 65.3
Rhsim13G0222700 Rhododendron simsii HOM05D000187 ORTHO05D000926 4.0e-11 71.6 57 54.4
THA.LOC104811128 Tarenaya hassleriana HOM05D000187 ORTHO05D000926 4.0e-11 71.6 47 61.7
TWI60G0677 Tripterygium wilfordii HOM05D000187 ORTHO05D000926 5.2e-11 71.2 52 63.5
Eucgr.J00783 Eucalyptus grandis HOM05D000187 ORTHO05D000926 6.8e-11 70.9 47 68.1
TWI34G1859 Tripterygium wilfordii HOM05D000187 ORTHO05D000926 6.8e-11 70.9 47 66.0
Dinv36269 Davidia involucrata HOM05D000187 ORTHO05D000926 8.9e-11 70.5 49 57.1
ClCG02G023330 Citrullus lanatus HOM05D000187 ORTHO05D000926 2.0e-10 69.3 47 70.2
CSS0048619 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000926 3.4e-10 68.6 47 61.7
PGR119G2308 Punica granatum HOM05D000187 ORTHO05D000926 3.4e-10 68.6 47 63.8
MELO3C014603.2 Cucumis melo HOM05D000187 ORTHO05D000926 5.8e-10 67.8 47 68.1
CsaV3_4G024180 Cucumis sativus L. HOM05D000187 ORTHO05D000926 5.8e-10 67.8 47 68.1
SGA_v2.0_scaffold247G44864 Striga asiatica HOM05D000187 ORTHO05D000926 7.6e-10 67.4 57 49.1
FAN16G3176 Fragaria x ananassa HOM05D000187 ORTHO05D000926 1.7e-09 66.2 47 63.8
vmacro04202 Vaccinium macrocarpon HOM05D000187 ORTHO05D000926 1.7e-09 66.2 47 59.6
Migut.D00588 Erythranthe guttata HOM05D000187 ORTHO05D000926 2.9e-09 65.5 47 55.3
Sed0026311 Sechium edule HOM05D000187 ORTHO05D000926 8.4e-09 63.9 47 66.0
Glyma.04G124951 Glycine max HOM05D000187 ORTHO05D212156 3.2e-08 62.0 30 93.3
Oeu063318.1 Olea europaea HOM05D000187 ORTHO05D000926 7.1e-08 60.8 47 53.2
Sc09g0000630 Simmondsia chinensis HOM05D000187 ORTHO05D000926 7.1e-08 60.8 47 51.1
MSTRG.18422 Avicennia marina HOM05D000187 ORTHO05D000926 1.2e-07 60.1 47 51.1
Lj2A632T28 Lonicera japonica HOM05D000187 ORTHO05D000926 2.7e-07 58.9 47 53.2
Peaxi162Scf00029g02618 Petunia axillaris HOM05D000187 ORTHO05D000926 4.6e-07 58.2 47 44.7
Ah.06g193750 Amaranthus hybridus HOM05D000187 ORTHO05D000926 1.3e-06 56.6 44 50.0
Nitab4.5_0022146g0010 Nicotiana tabacum HOM05D000187 ORTHO05D000926 1.7e-06 56.2 47 42.6
Hund07520 Selenicereus undatus HOM05D000187 ORTHO05D000926 1.7e-06 56.2 47 48.9
AUR62019280 Chenopodium quinoa HOM05D000560 ORTHO05D000926 2.3e-06 55.8 42 54.8
Oeu001472.1 Olea europaea HOM05D000187 ORTHO05D000926 2.3e-06 55.8 47 48.9
Nitab4.5_0000492g0150 Nicotiana tabacum HOM05D000187 ORTHO05D000926 3.0e-06 55.5 47 42.6
Nitab4.5_0002026g0150 Nicotiana tabacum HOM05D000187 ORTHO05D000926 3.0e-06 55.5 47 42.6
AUR62000103 Chenopodium quinoa HOM05D000001 ORTHO05D000003 6.6e-06 54.3 43 51.2
MELO3C029199.2 Cucumis melo HOM05D001185 ORTHO05D000926 6.6e-06 54.3 53 50.9
EL10Ac4g10290 Beta vulgaris HOM05D000187 ORTHO05D000926 8.6e-06 53.9 43 51.2


User provided reference genes

Program Settings