Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 9.9e-158 560.1 282 100.0
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 3.1e-135 485.3 282 87.9
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 4.2e-124 448.4 281 81.9
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 7.2e-116 421.0 284 77.5
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 2.7e-115 419.1 267 78.7
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.4e-114 416.8 272 77.9
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 2.3e-114 416.0 284 76.1
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 2.4e-103 379.4 279 68.5
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 5.9e-102 374.8 279 67.7
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 6.5e-101 371.3 241 75.5
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.1e-99 366.3 241 75.1
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 6.1e-99 364.8 261 69.3
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.0e-98 364.0 270 67.0
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 1.5e-97 360.1 270 68.5
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 1.7e-96 356.7 242 71.9
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 2.8e-96 355.9 273 66.7
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 3.7e-96 355.5 238 72.7
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 3.7e-96 355.5 237 71.3
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 4.8e-96 355.1 241 72.6
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 8.2e-96 354.4 275 67.3
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.4e-95 353.6 237 70.9
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 4.1e-95 352.1 272 65.8
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 5.3e-95 351.7 275 66.5
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 5.3e-95 351.7 240 71.2
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 9.1e-95 350.9 273 64.1
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.2e-94 350.5 237 70.5
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.6e-94 350.1 241 68.5
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.6e-94 350.1 272 65.1
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 2.6e-94 349.4 257 65.8
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 3.5e-94 349.0 253 70.0
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 1.0e-93 347.4 258 64.3
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 2.5e-92 342.8 240 69.2
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 2.5e-92 342.8 265 64.5
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.2e-92 342.0 271 62.7
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.2e-91 340.5 276 62.0
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.6e-91 340.1 274 61.7
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.6e-91 340.1 242 67.8
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 2.1e-91 339.7 277 61.7
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 2.7e-91 339.3 237 67.9
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 1.4e-90 337.0 232 68.5
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.8e-90 336.7 269 62.1
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 5.2e-90 335.1 249 65.1
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 6.8e-90 334.7 249 66.7
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 8.8e-90 334.3 236 68.2
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 2.0e-89 333.2 275 58.9
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 4.4e-89 332.0 268 60.4
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 5.7e-89 331.6 258 67.8
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 5.7e-89 331.6 277 59.6
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 7.5e-89 331.3 258 67.8
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 9.8e-89 330.9 282 64.9
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 3.7e-88 328.9 270 59.6
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.7e-88 328.9 278 58.6
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 8.3e-88 327.8 299 56.9
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 3.1e-87 325.9 238 65.1
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 3.1e-87 325.9 240 65.8
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 4.1e-87 325.5 238 65.1
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 4.1e-87 325.5 301 57.1
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.6e-86 323.6 256 64.1
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.0e-86 323.2 237 65.0
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 2.7e-86 322.8 274 58.4
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 2.7e-86 322.8 274 58.4
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 4.5e-86 322.0 266 60.5
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.9e-86 321.6 288 56.9
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 1.3e-85 320.5 238 64.3
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 1.7e-85 320.1 238 65.5
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 3.8e-85 318.9 290 58.6
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.5e-85 318.2 241 62.7
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.1e-84 317.4 274 57.7
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.5e-84 317.0 238 64.7
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 1.9e-84 316.6 279 56.6
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 4.2e-84 315.5 238 64.3
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 4.2e-84 315.5 238 64.3
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 4.2e-84 315.5 238 64.3
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 4.2e-84 315.5 238 64.3
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 5.5e-84 315.1 262 59.9
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 5.5e-84 315.1 297 53.9
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 1.6e-83 313.5 244 63.5
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 5.2e-82 308.5 260 60.0
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 2.0e-81 306.6 235 64.3
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 3.4e-81 305.8 276 58.3
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.1e-79 300.8 216 65.7
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 5.4e-79 298.5 257 59.5
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 1.6e-78 297.0 243 60.1
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.3e-77 293.1 259 60.6
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.9e-77 292.7 237 62.0
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 8.6e-77 291.2 273 57.9
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 4.2e-76 288.9 184 77.2
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 1.2e-75 287.3 241 61.4
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 1.6e-75 287.0 255 55.3
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.6e-75 287.0 265 56.6
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.4e-74 283.9 230 60.0
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 4.9e-72 275.4 265 55.8
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 4.9e-72 275.4 258 57.8
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.4e-71 273.9 270 54.1
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 4.1e-71 272.3 252 56.0
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 9.2e-71 271.2 238 55.0
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 5.9e-70 268.5 187 70.6
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 1.5e-68 263.8 284 50.0
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 1.5e-68 263.8 215 62.8
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 7.3e-68 261.5 249 57.4
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 7.3e-68 261.5 249 57.4
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 7.3e-68 261.5 249 57.4
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.0e-66 257.7 265 50.9
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 1.1e-63 247.7 196 67.3
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 3.0e-61 239.6 242 48.8
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.9e-60 236.9 185 62.2
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 9.5e-60 234.6 215 54.0
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.1e-58 229.6 188 59.6
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 1.2e-57 227.6 404 36.1
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 4.9e-56 222.2 242 48.3
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.1e-55 221.1 241 46.5
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.4e-49 199.5 230 44.3
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 8.4e-48 194.9 165 59.4
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 3.0e-45 186.4 161 55.3
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 1.5e-44 184.1 173 57.8
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 1.1e-39 167.9 136 61.0
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.7e-37 160.6 146 56.8
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.7e-37 160.6 161 50.3
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 5.1e-37 159.1 107 68.2
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 2.9e-32 143.3 236 38.1
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 4.2e-31 139.4 74 85.1
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 2.7e-30 136.7 77 79.2
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 3.5e-30 136.3 85 70.6
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.0e-29 134.8 102 62.7
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 3.9e-29 132.9 74 77.0
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.1e-28 131.3 73 78.1
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 7.6e-25 118.6 116 51.7
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 2.2e-24 117.1 136 47.8
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 5.5e-23 112.5 67 74.6
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.0e-21 108.2 81 61.7
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 1.3e-21 107.8 75 73.3
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 1.8e-21 107.5 76 65.8
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.8e-21 107.5 76 65.8
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 2.4e-18 97.1 63 74.6
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 5.5e-15 85.9 75 64.0
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 5.5e-15 85.9 73 60.3
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 7.1e-15 85.5 41 90.2
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 2.3e-13 80.5 79 51.9
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 8.7e-13 78.6 44 75.0
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.5e-12 77.0 43 76.7
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 6.3e-11 72.4 78 50.0
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.4e-10 70.5 80 52.5
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 4.1e-10 69.7 106 43.4
Phvul.005G077000 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.2e-09 68.2 38 76.3
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.4e-09 66.6 170 32.4
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.4e-07 61.2 200 26.0
C03p13750 Brassica napus HOM05D005444 ORTHO05D042479 9.3e-07 58.5 38 71.1
BolC3t13825H Brassica oleracea HOM05D005444 ORTHO05D042479 9.3e-07 58.5 38 71.1


User provided reference genes

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