Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G334000 Glycine max HOM05D001886 ORTHO05D004007 2.7e-53 211.8 114 100.0
Lj3g0013632 Lotus japonicus HOM05D001886 ORTHO05D004007 2.7e-37 158.7 120 74.2
VMungo1080G1431 Vigna mungo HOM05D001886 ORTHO05D004007 4.6e-37 157.9 118 74.6
Phvul.L003643 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 1.8e-33 146.0 116 72.4
Lalb_Chr03g0026781 Lupinus albus HOM05D001886 ORTHO05D004007 1.6e-26 122.9 115 67.0
Medtr2g096630 Medicago truncatula HOM05D001886 ORTHO05D004007 3.1e-25 118.6 112 66.1
TPR.G34284 Trifolium pratense HOM05D001886 ORTHO05D004007 8.9e-25 117.1 112 63.4
CiPaw.13G097900 Carya illinoinensis HOM05D001886 ORTHO05D004007 5.1e-20 101.3 113 57.5
RcHm_v2.0_Chr5g0063581 Rosa chinensis HOM05D001886 ORTHO05D004007 1.1e-19 100.1 109 56.9
Gohir.A07G096100 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.9e-19 99.4 93 59.1
Gohir.D07G100500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.9e-19 99.4 93 59.1
Gorai.001G108400 Gossypium raimondii HOM05D001886 ORTHO05D004007 1.9e-19 99.4 93 59.1
Prupe.6G081800 Prunus persica HOM05D001886 ORTHO05D004007 1.9e-19 99.4 114 55.3
arahy.Tifrunner.gnm1.ann1.F78JUJ Arachis hypogaea HOM05D001886 ORTHO05D004007 3.3e-19 98.6 101 63.4
Duzib150G0204 Durio zibethinus HOM05D001886 ORTHO05D004007 4.3e-19 98.2 113 52.2
Haze_24047 Corylus avellana HOM05D001886 ORTHO05D004007 2.8e-18 95.5 105 55.2
FAN21G2352 Fragaria x ananassa HOM05D001886 ORTHO05D004007 2.8e-18 95.5 109 53.2
Ciclev10030058m.g Citrus clementina HOM05D001886 ORTHO05D004007 3.6e-18 95.1 93 62.4
FAN16G1011 Fragaria x ananassa HOM05D001886 ORTHO05D004007 6.2e-18 94.4 109 53.2
Cfa011462 Carpinus fangiana HOM05D001886 ORTHO05D004007 1.1e-17 93.6 106 53.8
COL.COLO4_18467 Corchorus olitorius HOM05D001886 ORTHO05D004007 1.1e-17 93.6 108 53.7
MD03G1097600 Malus domestica HOM05D001886 ORTHO05D004007 1.1e-17 93.6 113 51.3
FvH4_3g35450 Fragaria vesca HOM05D001886 ORTHO05D004007 1.4e-17 93.2 109 53.2
Nn2g12929 Nelumbo nucifera HOM05D001886 ORTHO05D004007 1.8e-17 92.8 108 50.9
Thecc.09G325900 Theobroma cacao HOM05D001886 ORTHO05D004007 2.4e-17 92.4 107 53.3
TAR623G0309 Trochodendron aralioides HOM05D001886 ORTHO05D004007 2.4e-17 92.4 113 50.4
Gorai.003G135300 Gossypium raimondii HOM05D001886 ORTHO05D004007 3.1e-17 92.0 107 51.4
FAN25G1849 Fragaria x ananassa HOM05D001886 ORTHO05D004007 9.0e-17 90.5 93 57.0
Gohir.D03G128600 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.5e-16 89.7 107 50.5
FAN11G3942 Fragaria x ananassa HOM05D001886 ORTHO05D004007 2.0e-16 89.4 93 57.0
Medtr7g099860 Medicago truncatula HOM05D001886 ORTHO05D004007 2.6e-16 89.0 107 50.5
arahy.Tifrunner.gnm1.ann1.5KK3LT Arachis hypogaea HOM05D001886 ORTHO05D004007 7.6e-16 87.4 83 65.1
Atru.chr3.3836 Acer truncatum HOM05D001886 ORTHO05D004007 3.8e-15 85.1 105 53.3
Nn2g10427 Nelumbo nucifera HOM05D001886 ORTHO05D004007 4.9e-15 84.7 107 47.7
TPR.G21449 Trifolium pratense HOM05D001886 ORTHO05D004007 6.4e-15 84.3 109 47.7
CANSAT01G0239 Cannabis sativa HOM05D001886 ORTHO05D004007 8.4e-15 84.0 94 55.3
THA.LOC104800648 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 1.1e-14 83.6 105 51.4
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.4e-14 83.2 113 45.1
Lj1g0019269 Lotus japonicus HOM05D001886 ORTHO05D004007 2.4e-14 82.4 103 48.5
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 3.2e-14 82.0 107 47.7
Lj1g0006648 Lotus japonicus HOM05D001886 ORTHO05D004007 3.2e-14 82.0 99 49.5
Actinidia05303 Actinidia chinensis HOM05D001886 ORTHO05D004007 4.2e-14 81.6 108 44.4
PGR004G0749 Punica granatum HOM05D001886 ORTHO05D004007 4.2e-14 81.6 96 51.0
MBI14_g24316_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D004007 5.4e-14 81.3 106 49.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 7.1e-14 80.9 107 46.7
HanXRQChr13g0398891 Helianthus annuus HOM05D001886 ORTHO05D004007 7.1e-14 80.9 111 45.0
Rhsim05G0188300 Rhododendron simsii HOM05D001886 ORTHO05D004007 9.3e-14 80.5 113 44.2
TWI74G0754 Tripterygium wilfordii HOM05D001886 ORTHO05D004007 9.3e-14 80.5 114 43.0
Aqoxy2G02038 Aquilegia oxysepala HOM05D001886 ORTHO05D004007 1.2e-13 80.1 113 45.1
ECA233G1369 Erigeron canadensis HOM05D001886 ORTHO05D004007 1.2e-13 80.1 114 43.9
CiPaw.09G189700 Carya illinoinensis HOM05D001886 ORTHO05D004007 2.1e-13 79.3 108 48.1
Gohir.A03G039500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 2.1e-13 79.3 70 60.0
Psat3g049080 Pisum sativum HOM05D001886 ORTHO05D004007 2.1e-13 79.3 101 47.5
BcaB02g06704 Brassica carinata HOM05D001886 ORTHO05D004007 2.7e-13 79.0 101 47.5
Ciclev10013572m.g Citrus clementina HOM05D001886 ORTHO05D004007 2.7e-13 79.0 118 44.9
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.5e-13 78.6 97 46.4
Phvul.001G169700 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 3.5e-13 78.6 90 47.8
Glyma.19G172900 Glycine max HOM05D001886 ORTHO05D004007 4.6e-13 78.2 93 46.2
Lsat_1_v5_gn_6_31360 Lactuca sativa HOM05D001886 ORTHO05D004007 4.6e-13 78.2 111 42.3
CiPaw.10G143600 Carya illinoinensis HOM05D001886 ORTHO05D004007 6.0e-13 77.8 91 51.6
C05p05710 Brassica napus HOM05D001886 ORTHO05D004007 7.9e-13 77.4 99 48.5
Cfa017419 Carpinus fangiana HOM05D001886 ORTHO05D004007 7.9e-13 77.4 108 48.1
Eucgr.A01246 Eucalyptus grandis HOM05D001886 ORTHO05D004007 1.3e-12 76.6 115 43.5
Psat3g049240 Pisum sativum HOM05D001886 ORTHO05D004007 1.3e-12 76.6 99 47.5
MD12G1139400 Malus domestica HOM05D001886 ORTHO05D004007 1.8e-12 76.3 93 50.5
BolC5t29341H Brassica oleracea HOM05D001886 ORTHO05D015777 2.3e-12 75.9 99 48.5
Lalb_Chr01g0019251 Lupinus albus HOM05D001886 ORTHO05D004007 2.3e-12 75.9 107 44.9
PGR142G2414 Punica granatum HOM05D001886 ORTHO05D004007 2.3e-12 75.9 103 48.5
BraA09t41960Z Brassica rapa HOM05D001886 ORTHO05D004007 3.0e-12 75.5 105 45.7
Haze_20751 Corylus avellana HOM05D001886 ORTHO05D004007 3.0e-12 75.5 109 48.6
TAR636G3006 Trochodendron aralioides HOM05D001886 ORTHO05D004007 3.0e-12 75.5 94 54.3
AUR62041758 Chenopodium quinoa HOM05D001886 ORTHO05D004007 3.9e-12 75.1 92 45.7
Ca_08781_v3 Cicer arietinum L. HOM05D001886 ORTHO05D004007 3.9e-12 75.1 107 43.9
Thhalv10009977m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 3.9e-12 75.1 101 47.5
Hma1.2p1_0624F.1_g191360 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 3.9e-12 75.1 112 40.2
MD04G1123500 Malus domestica HOM05D001886 ORTHO05D004007 3.9e-12 75.1 108 45.4
Prupe.6G251200 Prunus persica HOM05D001886 ORTHO05D004007 3.9e-12 75.1 93 48.4
Sc12g0001630 Simmondsia chinensis HOM05D001886 ORTHO05D004007 3.9e-12 75.1 106 46.2
A09p66220 Brassica napus HOM05D001886 ORTHO05D004007 6.7e-12 74.3 105 44.8
AUR62036093 Chenopodium quinoa HOM05D001886 ORTHO05D004007 6.7e-12 74.3 118 47.5
COL.COLO4_14848 Corchorus olitorius HOM05D001886 ORTHO05D004007 6.7e-12 74.3 113 46.0
Lj5g0001892 Lotus japonicus HOM05D001886 ORTHO05D004007 6.7e-12 74.3 103 45.6
BcaC01g04990 Brassica carinata HOM05D001886 ORTHO05D004007 8.7e-12 73.9 100 49.0
C03p31370 Brassica napus HOM05D001886 ORTHO05D004007 8.7e-12 73.9 100 46.0
Cpa.g.sc190.15 Carica papaya HOM05D001886 ORTHO05D004007 8.7e-12 73.9 113 45.1
Nitab4.5_0003267g0060 Nicotiana tabacum HOM05D001886 ORTHO05D004007 8.7e-12 73.9 106 43.4
BolC3t15485H Brassica oleracea HOM05D001886 ORTHO05D004007 1.5e-11 73.2 100 48.0
Thhalv10017464m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 1.5e-11 73.2 104 48.1
Thecc.05G043600 Theobroma cacao HOM05D001886 ORTHO05D004007 1.5e-11 73.2 113 43.4
Ah.01g020040 Amaranthus hybridus HOM05D001886 ORTHO05D004007 1.9e-11 72.8 103 40.8
MELO3C003112.2 Cucumis melo HOM05D001886 ORTHO05D004007 1.9e-11 72.8 104 42.3
CsaV3_4G024780 Cucumis sativus L. HOM05D001886 ORTHO05D004007 1.9e-11 72.8 104 42.3
Glyma.03G172000 Glycine max HOM05D001886 ORTHO05D004007 1.9e-11 72.8 109 41.3
Hund04991 Selenicereus undatus HOM05D000437 ORTHO05D000324 1.9e-11 72.8 89 51.7
BcaC02g08141 Brassica carinata HOM05D001886 ORTHO05D004007 3.3e-11 72.0 103 47.6
C04p57930 Brassica napus HOM05D001886 ORTHO05D004007 3.3e-11 72.0 103 47.6
BolC4t27319H Brassica oleracea HOM05D001886 ORTHO05D004007 3.3e-11 72.0 103 47.6
CSS0007004 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 3.3e-11 72.0 115 38.3
CSS0016629 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 3.3e-11 72.0 115 38.3
Duzib093G1578 Durio zibethinus HOM05D001886 ORTHO05D004007 3.3e-11 72.0 93 46.2
A04p21800 Brassica napus HOM05D001886 ORTHO05D004007 4.3e-11 71.6 108 43.5
Lalb_Chr06g0171021 Lupinus albus HOM05D001886 ORTHO05D004007 4.3e-11 71.6 109 43.1
PSO339G5886 Papaver somniferum HOM05D001886 ORTHO05D004007 4.3e-11 71.6 115 40.0
BcaC07g42494 Brassica carinata HOM05D001886 ORTHO05D004007 5.6e-11 71.2 105 43.8
CARHR007610 Cardamine hirsuta HOM05D001886 ORTHO05D004007 5.6e-11 71.2 105 44.8
Migut.J00350 Erythranthe guttata HOM05D001886 ORTHO05D004007 5.6e-11 71.2 93 46.2
Hma1.2p1_1481F.1_g286140 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 5.6e-11 71.2 95 43.2
QL05p010714 Quercus lobata HOM05D001886 ORTHO05D004007 5.6e-11 71.2 93 48.4
QL07p047484 Quercus lobata HOM05D001886 ORTHO05D004007 5.6e-11 71.2 93 48.4
Sed0011835 Sechium edule HOM05D001886 ORTHO05D004007 5.6e-11 71.2 110 41.8
A03p26260 Brassica napus HOM05D001886 ORTHO05D004007 7.4e-11 70.9 104 47.1
BraA03t11840Z Brassica rapa HOM05D001886 ORTHO05D004007 7.4e-11 70.9 104 47.1
Sopen09g005220 Solanum pennellii HOM05D001886 ORTHO05D004007 1.3e-10 70.1 120 39.2
BraA04t17747Z Brassica rapa HOM05D001886 ORTHO05D004007 1.6e-10 69.7 107 43.0
Gohir.A09G157900 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.6e-10 69.7 93 44.1
Hma1.2p1_1707F.1_g298490 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 1.6e-10 69.7 95 42.1
AL1G18080 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 2.1e-10 69.3 105 43.8
CARHR132080 Cardamine hirsuta HOM05D001886 ORTHO05D004007 2.1e-10 69.3 111 44.1
CiPaw.09G189600 Carya illinoinensis HOM05D001886 ORTHO05D004007 2.1e-10 69.3 92 44.6
AUR62041036 Chenopodium quinoa HOM05D001886 ORTHO05D004007 2.1e-10 69.3 92 43.5
BcaB06g28246 Brassica carinata HOM05D001886 ORTHO05D004007 2.8e-10 68.9 106 44.3
Manes.09G087200 Manihot esculenta HOM05D001886 ORTHO05D004007 2.8e-10 68.9 113 42.5
RcHm_v2.0_Chr3g0467161 Rosa chinensis HOM05D001886 ORTHO05D004007 2.8e-10 68.9 105 44.8
SalBow4G1303 Salvia bowleyana HOM05D001886 ORTHO05D004007 2.8e-10 68.9 112 41.1
AT2G37530 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 3.6e-10 68.6 110 42.7
Gohir.D09G153200 Gossypium hirsutum HOM05D001886 ORTHO05D004007 3.6e-10 68.6 93 43.0
Gorai.006G174700 Gossypium raimondii HOM05D001886 ORTHO05D004007 3.6e-10 68.6 93 43.0
PGSC0003DMG400008923 Solanum tuberosum HOM05D001886 ORTHO05D004007 4.8e-10 68.2 120 40.0
ClCG02G020370 Citrullus lanatus HOM05D001886 ORTHO05D004007 6.2e-10 67.8 106 46.2
MELO3C013683.2 Cucumis melo HOM05D001886 ORTHO05D004007 6.2e-10 67.8 106 45.3
AT1G07795 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 8.1e-10 67.4 105 42.9
CANSAT35G1619 Cannabis sativa HOM05D001886 ORTHO05D004007 8.1e-10 67.4 94 42.6
ClCG04G008370 Citrullus lanatus HOM05D001886 ORTHO05D004007 8.1e-10 67.4 104 39.4
SalBow4G2596 Salvia bowleyana HOM05D001886 ORTHO05D004007 8.1e-10 67.4 93 45.2
Solyc09g010480.1 Solanum lycopersicum HOM05D001886 ORTHO05D004007 8.1e-10 67.4 120 38.3
HPP92_018051 Vanilla planifolia HOM05D001886 ORTHO05D004007 8.1e-10 67.4 95 45.3
HPP92_018060 Vanilla planifolia HOM05D001886 ORTHO05D004007 8.1e-10 67.4 95 45.3
Aa31LG5G22950 Aethionema arabicum HOM05D001886 ORTHO05D004007 1.1e-09 67.0 108 41.7
CSS0013260 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.1e-09 67.0 116 38.8
CSS0032829 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.1e-09 67.0 116 38.8
Thhalv10017427m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 1.1e-09 67.0 111 41.4
BcaB01g03772 Brassica carinata HOM05D001886 ORTHO05D004007 1.4e-09 66.6 111 42.3
BcaC01g05612 Brassica carinata HOM05D001886 ORTHO05D004007 1.4e-09 66.6 111 42.3
C03p24330 Brassica napus HOM05D001886 ORTHO05D004007 1.4e-09 66.6 111 42.3
BolC3t14831H Brassica oleracea HOM05D001886 ORTHO05D004007 1.4e-09 66.6 111 42.3
Sp4g19850 Schrenkiella parvula HOM05D001886 ORTHO05D004007 1.4e-09 66.6 111 42.3
CsaV3_6G022260 Cucumis sativus L. HOM05D001886 ORTHO05D004007 1.8e-09 66.2 106 44.3
AL4G34020 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 2.4e-09 65.9 110 42.7
Aa31LG5G7470 Aethionema arabicum HOM05D001886 ORTHO05D004007 4.0e-09 65.1 106 38.7
AT2G28725 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 4.0e-09 65.1 89 48.3
Carub.0001s0716 Capsella rubella HOM05D001886 ORTHO05D004007 4.0e-09 65.1 105 42.9
Lj3P970T51 Lonicera japonica HOM05D001886 ORTHO05D004007 4.0e-09 65.1 95 43.2
Sp4g11590 Schrenkiella parvula HOM05D001886 ORTHO05D004007 4.0e-09 65.1 104 42.3
Cpa.g.sc188.23 Carica papaya HOM05D001886 ORTHO05D004007 5.3e-09 64.7 113 38.9
BcaB01g03123 Brassica carinata HOM05D001886 ORTHO05D004007 6.9e-09 64.3 89 46.1
Nitab4.5_0002077g0050 Nicotiana tabacum HOM05D001886 ORTHO05D004007 6.9e-09 64.3 114 38.6
BraA03t11311Z Brassica rapa HOM05D001886 ORTHO05D004007 9.0e-09 63.9 111 41.4
AL4G23260 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 1.5e-08 63.2 95 47.4
THA.LOC104823422 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 2.0e-08 62.8 114 39.5
C08p50390 Brassica napus HOM05D001886 ORTHO05D004007 2.6e-08 62.4 94 43.6
BolC8t52567H Brassica oleracea HOM05D001886 ORTHO05D004007 2.6e-08 62.4 94 43.6
A03p20700 Brassica napus HOM05D001886 ORTHO05D004007 3.4e-08 62.0 111 40.5
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 3.4e-08 62.0 113 37.2
ATR0723G053 Amborella trichopoda HOM05D001886 ORTHO05D004007 4.5e-08 61.6 100 41.0
Potri.006G083800 Populus trichocarpa HOM05D001886 ORTHO05D004007 5.8e-08 61.2 93 45.2
Actinidia26440 Actinidia chinensis HOM05D001886 ORTHO05D004007 7.6e-08 60.8 81 43.2
Actinidia11249 Actinidia chinensis HOM05D001886 ORTHO05D004007 9.9e-08 60.5 88 42.0
DCAR_009245 Daucus carota HOM05D001886 ORTHO05D004007 9.9e-08 60.5 115 36.5
FAN14G5259 Fragaria x ananassa HOM05D001886 ORTHO05D004007 9.9e-08 60.5 105 41.0
CSS0006045 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.3e-07 60.1 115 39.1
FvH4_6g14180 Fragaria vesca HOM05D001886 ORTHO05D004007 1.3e-07 60.1 105 41.0
FAN05G2305 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.3e-07 60.1 105 41.0
SGA_v2.0_scaffold126G33809 Striga asiatica HOM05D001886 ORTHO05D004007 1.3e-07 60.1 94 40.4
FAN09G0249 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.7e-07 59.7 105 41.0
HPP92_006604 Vanilla planifolia HOM05D001886 ORTHO05D004007 1.7e-07 59.7 113 36.3
Sabra06G0063400 Salix brachista HOM05D001886 ORTHO05D004007 2.2e-07 59.3 93 45.2
CARHR121860 Cardamine hirsuta HOM05D001886 ORTHO05D004007 2.9e-07 58.9 102 41.2
VMungo0720G0839 Vigna mungo HOM05D001886 ORTHO05D004007 3.2e-06 55.5 94 41.5
Carub.0004s0974 Capsella rubella HOM05D001886 ORTHO05D004007 4.2e-06 55.1 89 46.1
VMungo1383G2619 Vigna mungo HOM05D001886 ORTHO05D004007 5.5e-06 54.7 89 36.0
Glyma.10G043800 Glycine max HOM05D001886 ORTHO05D004007 7.1e-06 54.3 90 41.1
BcaC07g41980 Brassica carinata HOM05D001886 ORTHO05D004007 9.3e-06 53.9 105 39.0
Sed0021579 Sechium edule HOM05D001886 ORTHO05D004007 9.3e-06 53.9 107 33.6


User provided reference genes

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