Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.1e-223 779.6 378 100.0
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 5.9e-206 720.7 378 91.0
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 2.0e-193 679.1 378 86.8
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 7.2e-180 634.0 380 80.5
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 4.4e-177 624.8 382 78.3
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 6.3e-176 620.9 385 77.9
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 5.4e-175 617.8 384 79.2
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 1.3e-173 613.2 384 78.9
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 2.9e-173 612.1 368 79.6
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.1e-167 593.6 343 80.8
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 9.2e-167 590.5 368 76.6
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.5e-156 556.6 366 73.0
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 4.9e-152 541.6 368 70.9
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 4.6e-150 535.0 372 68.5
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 6.0e-150 534.6 386 66.8
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.3e-149 533.5 357 71.7
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 1.7e-149 533.1 379 69.4
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 3.0e-149 532.3 361 70.1
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 3.9e-149 531.9 368 68.5
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.1e-148 530.4 359 71.3
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.9e-148 529.6 364 68.7
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 3.6e-147 525.4 364 70.3
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 8.1e-147 524.2 378 70.4
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.4e-146 523.5 373 66.5
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 2.3e-146 522.7 369 68.8
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 4.0e-146 521.9 356 71.3
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 4.0e-146 521.9 367 67.0
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 4.0e-146 521.9 370 68.4
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 6.8e-146 521.2 390 65.4
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.8e-145 518.1 390 65.1
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 7.5e-145 517.7 357 67.8
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 3.7e-144 515.4 389 65.0
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 6.4e-144 514.6 378 66.7
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.1e-143 513.8 358 69.3
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 2.4e-143 512.7 357 68.6
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 4.1e-143 511.9 345 71.0
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 9.2e-143 510.8 357 67.2
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 2.1e-142 509.6 357 67.2
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 2.1e-142 509.6 357 67.2
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 2.7e-142 509.2 384 64.8
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.5e-142 508.8 384 64.1
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 4.6e-142 508.4 365 65.8
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 6.0e-142 508.1 349 68.5
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.7e-141 506.5 345 70.7
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 1.7e-141 506.5 378 65.1
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.3e-141 506.1 358 69.3
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 3.0e-141 505.8 364 65.9
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 5.1e-141 505.0 357 66.9
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.1e-141 505.0 357 66.9
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 5.1e-141 505.0 370 65.7
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 6.6e-141 504.6 356 68.3
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.9e-140 503.1 355 67.0
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.9e-140 503.1 401 62.8
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 3.3e-140 502.3 372 65.6
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 3.3e-140 502.3 358 69.0
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 7.3e-140 501.1 444 58.8
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.1e-139 499.6 359 66.0
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 2.1e-139 499.6 376 67.6
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 4.7e-139 498.4 353 67.4
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 4.7e-139 498.4 343 70.3
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.1e-138 497.3 345 68.4
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.1e-138 497.3 370 64.6
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 5.2e-138 495.0 376 65.4
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 9.9e-137 490.7 345 68.7
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 9.9e-137 490.7 348 67.2
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 9.9e-137 490.7 379 63.6
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 1.3e-136 490.3 359 65.2
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 8.4e-136 487.6 357 65.3
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.4e-135 486.9 356 66.6
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.9e-135 486.5 389 61.7
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 2.4e-135 486.1 354 66.9
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 4.1e-135 485.3 379 63.3
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.1e-135 485.3 379 64.4
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 9.2e-135 484.2 352 67.6
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.1e-134 483.0 381 62.7
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.5e-134 482.3 379 63.9
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 3.5e-134 482.3 361 66.8
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 2.3e-133 479.6 371 61.7
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 5.1e-133 478.4 356 62.9
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 6.6e-133 478.0 355 63.9
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 8.6e-133 477.6 359 64.6
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.5e-132 476.9 349 65.9
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.5e-132 476.1 381 62.2
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 5.6e-132 474.9 371 61.2
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 3.6e-131 472.2 356 65.4
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 3.6e-131 472.2 341 65.1
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 6.2e-131 471.5 356 62.1
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 1.1e-130 470.7 409 59.2
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 1.8e-130 469.9 345 65.2
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 3.1e-130 469.2 352 65.6
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 2.0e-129 466.5 357 63.0
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.2e-128 463.0 354 62.1
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 3.5e-126 455.7 432 55.3
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 7.8e-126 454.5 386 58.5
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 2.3e-125 453.0 376 59.6
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.9e-125 452.2 371 62.0
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 3.9e-125 452.2 345 63.8
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 1.1e-124 450.7 311 68.2
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.9e-124 449.9 422 56.4
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 4.8e-123 445.3 361 58.4
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 3.1e-122 442.6 350 64.6
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 4.0e-122 442.2 365 60.0
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.0e-122 441.0 408 55.9
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 8.4e-120 434.5 346 62.7
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 2.4e-119 433.0 311 69.5
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 9.3e-119 431.0 361 59.0
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.2e-118 430.6 333 64.6
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.9e-118 427.9 411 54.0
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 2.5e-116 422.9 373 57.9
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.1e-115 419.9 365 59.5
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 3.6e-115 419.1 368 59.5
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 6.2e-115 418.3 365 57.5
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.4e-114 417.2 525 45.5
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.4e-114 416.4 356 59.0
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 4.0e-114 415.6 358 58.1
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 9.0e-114 414.5 376 55.9
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 7.6e-113 411.4 337 58.8
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 1.1e-111 407.5 358 59.5
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 1.4e-111 407.1 544 42.5
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.9e-110 401.4 388 55.4
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 4.0e-106 389.0 307 60.6
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 5.3e-106 388.7 400 52.0
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 9.3e-103 377.9 258 70.2
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.3e-101 374.0 273 64.5
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.5e-100 370.5 275 66.2
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 4.3e-100 369.0 244 72.1
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.7e-100 368.6 344 54.9
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 4.6e-94 349.0 267 62.9
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.3e-92 342.8 380 47.4
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 7.4e-92 341.7 351 49.6
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 9.7e-92 341.3 297 57.2
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 2.2e-91 340.1 366 48.6
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 2.0e-89 333.6 239 66.5
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.2e-86 324.3 358 50.3
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 2.6e-84 316.6 241 64.3
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 4.1e-82 309.3 347 48.1
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.4e-77 294.3 211 68.2
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 8.5e-72 275.0 538 34.8
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.9e-71 273.9 289 53.3
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 9.4e-71 271.6 383 42.8
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.7e-67 260.8 351 44.4
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 2.9e-64 250.0 197 64.5
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 2.2e-59 233.8 297 42.1
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 3.6e-54 216.5 266 46.2
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 2.2e-51 207.2 196 50.5
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.0e-40 171.8 94 86.2
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 6.6e-40 169.1 366 32.2
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 6.6e-40 169.1 315 33.3
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 8.6e-40 168.7 129 63.6
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 1.5e-39 167.9 328 32.0
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 2.8e-38 163.7 81 93.8
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.8e-36 156.0 172 50.0
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.4e-28 129.8 117 53.8
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.1e-18 98.6 64 64.1
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 2.3e-16 90.9 56 71.4
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 1.1e-15 88.6 47 87.2
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.4e-11 72.8 43 76.7
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 9.3e-10 68.9 135 34.8
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 4.3e-07 60.1 35 62.9


User provided reference genes

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