Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 3.2e-87 325.1 167 100.0
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 4.8e-67 258.1 171 83.0
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 7.9e-54 214.2 135 83.0
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 1.6e-46 189.9 119 78.2
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.0e-40 170.6 133 70.7
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.3e-40 170.2 129 66.7
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 6.1e-38 161.4 129 63.6
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 3.9e-37 158.7 129 63.6
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 6.7e-37 157.9 129 62.8
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 3.3e-36 155.6 138 66.7
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 2.2e-35 152.9 149 57.0
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 3.7e-35 152.1 134 63.4
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 4.8e-35 151.8 129 62.0
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 6.3e-35 151.4 125 62.4
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 6.3e-35 151.4 130 66.2
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.8e-34 149.8 129 64.3
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 2.4e-34 149.4 131 58.8
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 4.1e-34 148.7 131 62.6
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 6.9e-34 147.9 127 60.6
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 9.1e-34 147.5 130 62.3
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 2.6e-33 146.0 117 63.2
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 4.5e-33 145.2 128 58.6
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.5e-33 145.2 117 62.4
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 4.5e-33 145.2 113 69.9
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.9e-33 144.8 117 62.4
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.2e-32 142.9 117 61.5
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 2.9e-32 142.5 117 61.5
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.9e-32 142.5 117 61.5
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 3.8e-32 142.1 116 60.3
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 3.8e-32 142.1 130 54.6
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 6.5e-32 141.4 130 59.2
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 8.5e-32 141.0 129 57.4
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.2e-31 139.0 130 57.7
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.4e-31 137.5 130 56.2
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 9.4e-31 137.5 130 56.2
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 6.1e-30 134.8 125 56.8
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 7.9e-30 134.4 121 57.9
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.4e-29 133.7 125 56.0
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.4e-29 133.7 157 51.0
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.3e-29 132.9 125 56.8
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 3.0e-29 132.5 135 57.8
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.1e-29 131.7 127 57.5
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.8e-29 131.0 127 55.9
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.5e-28 130.2 127 55.9
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.5e-28 130.2 118 60.2
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 3.3e-28 129.0 126 51.6
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 5.7e-28 128.3 122 54.9
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.3e-27 127.1 122 58.2
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 4.8e-27 125.2 124 53.2
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 6.3e-27 124.8 132 51.5
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 1.8e-26 123.2 117 55.6
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.4e-26 122.9 121 52.1
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 5.3e-26 121.7 151 49.7
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 6.9e-26 121.3 129 50.4
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 3.4e-25 119.0 134 48.5
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 3.4e-25 119.0 134 50.7
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 4.5e-25 118.6 134 46.3
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 2.2e-24 116.3 131 54.2
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 3.8e-24 115.5 123 52.8
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 3.8e-24 115.5 125 51.2
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 5.0e-24 115.2 164 43.9
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 6.5e-24 114.8 135 48.1
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 8.5e-24 114.4 126 46.0
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.4e-23 113.6 123 56.1
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 5.5e-23 111.7 127 47.2
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.6e-22 110.2 119 47.9
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.6e-22 110.2 125 52.0
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.7e-22 109.4 120 49.2
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 8.0e-22 107.8 118 52.5
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 1.4e-21 107.1 140 45.0
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.3e-21 106.3 130 52.3
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 5.2e-21 105.1 130 45.4
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 6.7e-21 104.8 124 50.0
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.1e-20 104.0 106 52.8
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.6e-20 102.8 101 51.5
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.7e-19 100.1 135 45.9
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.2e-19 99.8 125 45.6
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 2.8e-19 99.4 133 42.1
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 4.8e-19 98.6 135 45.9
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 6.3e-19 98.2 117 41.9
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.3e-19 98.2 136 41.2
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.1e-18 97.4 126 48.4
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.8e-18 96.7 106 51.9
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 5.3e-18 95.1 121 50.4
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.6e-17 93.6 105 48.6
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 2.0e-17 93.2 112 50.0
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.0e-17 93.2 112 47.3
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 3.5e-17 92.4 103 47.6
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 3.5e-17 92.4 103 47.6
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 3.5e-17 92.4 103 50.5
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.5e-17 92.4 117 46.2
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.5e-17 92.4 117 46.2
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.5e-17 92.4 130 43.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 4.5e-17 92.0 119 45.4
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 4.5e-17 92.0 127 44.1
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 4.5e-17 92.0 128 43.0
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 4.5e-17 92.0 127 40.9
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.0e-16 90.9 118 44.1
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.9e-16 89.4 118 42.4
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 5.0e-16 88.6 127 40.9
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 8.5e-16 87.8 118 42.4
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.1e-15 87.4 104 46.2
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.1e-15 87.4 115 44.3
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.1e-15 87.4 115 44.3
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.5e-15 87.0 124 41.1
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 2.5e-15 86.3 103 47.6
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 2.5e-15 86.3 103 44.7
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 3.2e-15 85.9 105 44.8
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 4.2e-15 85.5 111 48.6
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 5.5e-15 85.1 129 41.1
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 5.5e-15 85.1 105 46.7
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 5.5e-15 85.1 105 46.7
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 7.2e-15 84.7 105 44.8
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 7.2e-15 84.7 105 45.7
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 2.7e-14 82.8 105 43.8
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.4e-13 80.5 129 38.8
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 1.8e-13 80.1 135 43.7
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 3.3e-12 75.9 115 41.7
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 3.7e-11 72.4 71 52.1
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 3.7e-11 72.4 123 39.8
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 6.3e-11 71.6 120 41.7
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 2.4e-10 69.7 111 38.7
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 9.1e-10 67.8 96 47.9
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.6e-09 67.0 129 33.3
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 2.0e-09 66.6 113 38.1
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 5.0e-08 62.0 111 34.2
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 5.0e-08 62.0 111 34.2
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 5.0e-08 62.0 123 35.0
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 1.1e-07 60.8 105 39.0
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 3.2e-07 59.3 127 36.2
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 5.5e-07 58.5 117 29.9
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 5.5e-07 58.5 121 36.4
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 7.2e-07 58.2 128 31.2
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 6.1e-06 55.1 132 34.8


User provided reference genes

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