Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 0.0e+00 1124.0 582 100.0
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.5e-288 995.7 579 88.9
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 1.2e-282 976.1 580 87.8
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 3.0e-265 918.3 561 85.6
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 1.8e-254 882.5 499 92.8
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 2.9e-252 875.2 561 82.0
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.0e-249 866.7 561 81.3
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.9e-248 862.4 561 81.1
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 6.0e-242 840.9 564 77.0
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.5e-229 799.7 564 74.5
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 7.9e-226 787.3 564 73.2
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 1.6e-223 779.6 560 73.4
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 2.4e-222 775.8 566 71.6
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 8.1e-215 750.7 476 82.1
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 1.4e-214 750.0 567 69.8
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 2.4e-214 749.2 562 70.3
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 1.3e-209 733.4 578 68.3
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 1.8e-209 733.0 561 69.3
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.6e-207 726.5 567 68.3
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 8.2e-207 724.2 567 68.1
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 8.2e-207 724.2 568 66.7
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 8.2e-207 724.2 562 66.4
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.1e-206 723.8 570 67.7
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 1.5e-205 719.9 563 68.6
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.3e-204 716.8 562 66.5
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 6.5e-204 714.5 565 67.4
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 8.5e-204 714.1 565 67.4
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 8.5e-204 714.1 568 66.9
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.1e-203 713.8 568 66.2
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.2e-203 711.8 574 66.7
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 4.2e-203 711.8 568 66.4
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.6e-202 709.9 575 65.9
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.7e-202 709.1 575 65.7
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.3e-201 706.8 561 67.4
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.3e-201 706.1 562 64.6
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.9e-201 705.3 572 66.1
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.7e-201 704.1 575 65.6
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.9e-200 703.0 564 66.5
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 2.5e-200 702.6 564 65.4
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 5.7e-200 701.4 571 66.5
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.7e-200 700.7 562 64.4
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.4e-198 696.8 562 65.5
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 6.5e-196 688.0 573 64.7
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 3.2e-195 685.6 519 69.4
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 9.4e-195 684.1 572 63.6
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 9.4e-195 684.1 574 63.8
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 7.9e-194 681.0 605 63.1
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 1.0e-193 680.6 569 63.4
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 2.3e-193 679.5 567 64.9
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 3.0e-193 679.1 551 66.4
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 3.0e-193 679.1 561 62.0
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.8e-190 669.8 565 63.5
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 2.4e-190 669.5 569 64.9
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 3.1e-190 669.1 580 62.8
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 6.9e-190 667.9 560 64.6
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 9.1e-190 667.5 563 64.7
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 2.0e-189 666.4 565 62.5
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 2.0e-189 666.4 574 62.5
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.4e-189 665.6 562 62.8
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 4.5e-189 665.2 566 63.4
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 5.0e-188 661.8 564 61.9
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 8.5e-188 661.0 568 61.3
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 8.5e-188 661.0 568 61.3
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 1.1e-187 660.6 505 67.7
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 1.4e-187 660.2 565 62.7
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 2.5e-187 659.4 573 62.1
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 2.5e-187 659.4 564 61.9
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 3.2e-187 659.1 568 60.9
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 7.2e-187 657.9 572 61.9
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 9.4e-187 657.5 568 61.1
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 2.1e-186 656.4 568 60.9
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 7.9e-186 654.4 566 61.0
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 1.0e-185 654.1 568 61.4
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 3.9e-185 652.1 567 61.9
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 3.9e-185 652.1 556 63.1
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 8.8e-185 651.0 499 65.9
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.1e-184 650.6 564 61.2
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 2.6e-184 649.4 564 61.2
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 4.4e-184 648.7 589 59.6
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.3e-183 647.1 572 61.0
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.1e-182 644.0 578 60.0
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 2.4e-182 642.9 598 60.0
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 3.1e-182 642.5 565 61.6
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 9.1e-182 641.0 583 60.7
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.7e-180 636.7 562 61.6
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 5.5e-179 631.7 642 56.5
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 4.0e-177 625.5 564 59.8
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 8.8e-177 624.4 562 60.7
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 9.7e-176 620.9 565 59.6
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 5.0e-172 608.6 599 57.6
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 3.4e-168 595.9 476 66.2
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 4.4e-168 595.5 578 57.4
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 3.8e-164 582.4 464 64.9
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 6.5e-164 581.6 563 59.5
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.4e-161 573.9 506 60.3
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 2.6e-160 569.7 562 56.9
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 7.5e-160 568.2 504 61.3
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 9.2e-158 561.2 502 60.6
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 2.3e-153 546.6 563 57.7
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 1.4e-150 537.3 548 55.7
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 6.2e-146 521.9 569 53.3
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.5e-139 500.7 532 52.6
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.6e-139 498.8 349 71.1
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 9.5e-139 498.0 571 50.1
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.1e-137 494.6 349 72.8
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 1.9e-134 483.8 478 56.9
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.4e-134 483.4 513 51.7
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 4.6e-133 479.2 579 51.6
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 4.7e-130 469.2 519 53.0
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 6.2e-130 468.8 340 69.4
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 2.4e-129 466.8 403 62.8
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 9.3e-118 428.3 371 61.7
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 2.1e-114 417.2 485 48.7
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 8.4e-111 405.2 244 81.6
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 8.4e-111 405.2 244 81.6
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.6e-109 401.0 243 84.8
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.7e-101 373.6 233 78.1
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 4.6e-101 372.9 413 52.8
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 3.4e-96 356.7 388 52.3
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.7e-95 354.4 407 51.8
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.7e-93 347.1 279 63.1
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 3.5e-93 346.7 420 50.7
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 8.7e-92 342.0 192 88.5
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 5.9e-88 329.3 303 56.4
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 2.3e-84 317.4 391 50.4
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 4.3e-83 313.2 234 73.9
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 9.7e-83 312.0 581 35.8
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.8e-82 310.5 342 52.0
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 5.3e-81 306.2 570 37.2
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 2.7e-77 293.9 159 89.3
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.8e-76 291.2 378 48.1
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 9.4e-62 242.3 143 82.5
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.7e-61 240.0 143 85.3
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.2e-59 235.3 143 83.2
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 9.7e-59 232.3 180 68.9
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 2.4e-57 227.6 134 86.6
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 9.1e-57 225.7 461 37.3
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.0e-55 219.9 128 85.9
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 9.5e-46 189.1 565 30.6
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 5.2e-36 156.8 498 28.5
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.7e-34 150.6 88 84.1
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.6e-32 143.7 91 78.0
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.5e-30 136.0 160 49.4
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 1.1e-25 122.5 256 35.2
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 8.6e-23 112.8 176 40.9
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 8.6e-23 112.8 203 37.4
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 1.6e-21 108.6 132 48.5
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.1e-21 108.2 188 33.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 4.4e-19 100.5 81 67.9
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 7.5e-19 99.8 258 30.6
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.3e-18 96.3 122 49.2
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.4e-17 93.6 52 86.5
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 5.1e-15 87.0 45 88.9
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 2.3e-07 61.6 201 27.9
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 3.3e-06 57.8 32 90.6
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 5.6e-06 57.0 317 26.8


User provided reference genes

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