Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G322700 Glycine max HOM05D007495 ORTHO05D009552 1.9e-89 332.4 162 100.0
Phvul.005G131100 Phaseolus vulgaris HOM05D007495 ORTHO05D009552 7.1e-68 260.8 151 80.1
VMungo1080G0225 Vigna mungo HOM05D007495 ORTHO05D009552 1.4e-63 246.5 152 75.7
arahy.Tifrunner.gnm1.ann1.F5YJ3L Arachis hypogaea HOM05D007495 ORTHO05D009552 3.5e-51 205.3 170 61.2
arahy.Tifrunner.gnm1.ann1.KUS9HA Arachis hypogaea HOM05D007495 ORTHO05D009552 3.5e-51 205.3 168 61.3
Lalb_Chr24g0394861 Lupinus albus HOM05D007495 ORTHO05D009552 3.5e-51 205.3 173 58.4
QL01p015526 Quercus lobata HOM05D007495 ORTHO05D009552 5.0e-45 184.9 155 58.7
SalBow3G3637 Salvia bowleyana HOM05D007495 ORTHO05D009552 6.5e-45 184.5 163 53.4
Hma1.2p1_0051F.1_g029310 Hydrangea macrophylla HOM05D007495 ORTHO05D009552 1.9e-44 183.0 160 55.6
GSVIVG01031491001 Vitis vinifera HOM05D007495 ORTHO05D009552 9.4e-44 180.6 155 56.1
SalBow1G5708 Salvia bowleyana HOM05D007495 ORTHO05D009552 2.7e-43 179.1 164 50.6
MSTRG.17767 Avicennia marina HOM05D007495 ORTHO05D009552 4.6e-43 178.3 166 50.6
Prupe.6G109500 Prunus persica HOM05D007495 ORTHO05D009552 6.1e-43 177.9 144 59.0
Atru.chr3.3537 Acer truncatum HOM05D007495 ORTHO05D009552 7.9e-43 177.6 145 57.2
CsaV3_6G014270 Cucumis sativus L. HOM05D007495 ORTHO05D009552 7.9e-43 177.6 153 56.2
SGA_v2.0_scaffold436G51603 Striga asiatica HOM05D007495 ORTHO05D009552 1.0e-42 177.2 165 52.7
Oeu018477.1 Olea europaea HOM05D007495 ORTHO05D009552 1.4e-42 176.8 161 54.0
ClCG02G021490 Citrullus lanatus HOM05D007495 ORTHO05D009552 2.3e-42 176.0 145 57.2
Haze_23728 Corylus avellana HOM05D007495 ORTHO05D009552 3.0e-42 175.6 144 59.0
Nn6g35262 Nelumbo nucifera HOM05D007495 ORTHO05D009552 3.0e-42 175.6 154 56.5
Cc01_g10460 Coffea canephora HOM05D007495 ORTHO05D009552 5.1e-42 174.9 177 48.6
CiPaw.13G124600 Carya illinoinensis HOM05D007495 ORTHO05D009552 1.1e-41 173.7 145 57.9
MELO3C026944.2 Cucumis melo HOM05D007495 ORTHO05D009552 1.5e-41 173.3 154 54.5
Eucgr.B03939 Eucalyptus grandis HOM05D007495 ORTHO05D009552 2.5e-41 172.6 150 54.0
Cfa010302 Carpinus fangiana HOM05D007495 ORTHO05D009552 7.4e-41 171.0 144 58.3
MD11G1146400 Malus domestica HOM05D007495 ORTHO05D009552 7.4e-41 171.0 156 55.1
Manes.04G014200 Manihot esculenta HOM05D007495 ORTHO05D009552 1.3e-40 170.2 148 56.1
RcHm_v2.0_Chr5g0057451 Rosa chinensis HOM05D007495 ORTHO05D009552 1.3e-40 170.2 144 55.6
Ah.01g003160 Amaranthus hybridus HOM05D007495 ORTHO05D009552 2.2e-40 169.5 145 57.9
CSS0017583 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 2.8e-40 169.1 174 48.9
HanXRQChr09g0259381 Helianthus annuus HOM05D007495 ORTHO05D009552 2.8e-40 169.1 136 59.6
TAR633G0300 Trochodendron aralioides HOM05D007495 ORTHO05D009552 2.8e-40 169.1 158 55.1
Sed0010722 Sechium edule HOM05D007495 ORTHO05D009552 3.7e-40 168.7 154 54.5
Actinidia24137 Actinidia chinensis HOM05D007495 ORTHO05D009552 8.2e-40 167.5 155 54.2
Ciclev10029419m.g Citrus clementina HOM05D007495 ORTHO05D009552 8.2e-40 167.5 151 53.0
Rhsim13G0099600 Rhododendron simsii HOM05D007495 ORTHO05D009552 1.8e-39 166.4 164 51.2
FAN21G3793 Fragaria x ananassa HOM05D007495 ORTHO05D009552 2.4e-39 166.0 147 51.7
FAN25G1473 Fragaria x ananassa HOM05D007495 ORTHO05D009552 2.4e-39 166.0 144 53.5
PGR102G0900 Punica granatum HOM05D007495 ORTHO05D009552 2.4e-39 166.0 151 53.6
Sabra04G0146300 Salix brachista HOM05D007495 ORTHO05D009552 4.1e-39 165.2 153 53.6
DCAR_018778 Daucus carota HOM05D007495 ORTHO05D009552 5.3e-39 164.9 167 51.5
Dinv34730 Davidia involucrata HOM05D007495 ORTHO05D009552 6.9e-39 164.5 155 54.2
Migut.N02567 Erythranthe guttata HOM05D007495 ORTHO05D009552 6.9e-39 164.5 148 51.4
Nitab4.5_0005092g0010 Nicotiana tabacum HOM05D007495 ORTHO05D009552 1.5e-38 163.3 180 44.4
Potri.004G215300 Populus trichocarpa HOM05D007495 ORTHO05D009552 1.5e-38 163.3 153 52.9
Hund08367 Selenicereus undatus HOM05D007495 ORTHO05D009552 4.5e-38 161.8 154 52.6
AUR62029199 Chenopodium quinoa HOM05D007495 ORTHO05D009552 7.7e-38 161.0 144 55.6
Lj2C1012G12 Lonicera japonica HOM05D007495 ORTHO05D009552 7.7e-38 161.0 145 53.8
Nitab4.5_0000329g0280 Nicotiana tabacum HOM05D007495 ORTHO05D009552 1.0e-37 160.6 173 44.5
AUR62014942 Chenopodium quinoa HOM05D007495 ORTHO05D009552 1.3e-37 160.2 144 55.6
Aqoxy1G01135 Aquilegia oxysepala HOM05D007495 ORTHO05D009552 2.9e-37 159.1 137 55.5
PGSC0003DMG400000407 Solanum tuberosum HOM05D007495 ORTHO05D009552 1.1e-36 157.1 176 44.9
PGSC0003DMG400010906 Solanum tuberosum HOM05D007495 ORTHO05D009552 4.2e-36 155.2 177 44.1
Lsat_1_v5_gn_2_96660 Lactuca sativa HOM05D007495 ORTHO05D009552 5.5e-36 154.8 156 50.6
Sopen11g025970 Solanum pennellii HOM05D007495 ORTHO05D009552 5.5e-36 154.8 178 44.4
Peaxi162Scf00892g00019 Petunia axillaris HOM05D007495 ORTHO05D009552 2.1e-35 152.9 151 49.7
Solyc11g066240.3 Solanum lycopersicum HOM05D007495 ORTHO05D009552 2.7e-35 152.5 179 43.6
Sopen01g017570 Solanum pennellii HOM05D007495 ORTHO05D009552 3.6e-35 152.1 175 44.6
Carub.0004s0888 Capsella rubella HOM05D007495 ORTHO05D009552 4.7e-35 151.8 148 51.4
AL4G22050 Arabidopsis lyrata HOM05D007495 ORTHO05D009552 3.0e-34 149.1 165 47.9
Thhalv10017338m.g Eutrema salsugineum HOM05D007495 ORTHO05D009552 1.1e-33 147.1 150 50.0
AT2G28105 Arabidopsis thaliana HOM05D007495 ORTHO05D009552 2.0e-33 146.4 146 48.6
A03p26400 Brassica napus HOM05D007495 ORTHO05D009552 2.6e-33 146.0 146 51.4
BraA03t11855Z Brassica rapa HOM05D007495 ORTHO05D009552 2.6e-33 146.0 146 51.4
BcaC01g04959 Brassica carinata HOM05D007495 ORTHO05D009552 3.3e-33 145.6 146 50.7
C03p31690 Brassica napus HOM05D007495 ORTHO05D009552 3.3e-33 145.6 146 50.7
BolC3t15512H Brassica oleracea HOM05D007495 ORTHO05D009552 3.3e-33 145.6 146 50.7
BcaB01g03091 Brassica carinata HOM05D007495 ORTHO05D009552 4.4e-33 145.2 151 49.7
CARHR120870 Cardamine hirsuta HOM05D007495 ORTHO05D009552 4.4e-33 145.2 144 50.7
THA.LOC104800583 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 9.7e-33 144.1 159 47.2
Thecc.09G349500 Theobroma cacao HOM05D007495 ORTHO05D009552 9.7e-33 144.1 142 49.3
vmacro03264 Vaccinium macrocarpon HOM05D007495 ORTHO05D009552 1.3e-32 143.7 198 39.9
ATR1132G058 Amborella trichopoda HOM05D007495 ORTHO05D009552 2.2e-32 142.9 164 44.5
EL10Ac9g22596 Beta vulgaris HOM05D007495 ORTHO05D009552 2.2e-32 142.9 182 42.9
Sp4g10910 Schrenkiella parvula HOM05D007495 ORTHO05D009552 8.2e-32 141.0 160 46.2
THA.LOC104808393 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 8.2e-32 141.0 157 47.1
MBI11_g41957_MAGBIO Magnolia biondii HOM05D007495 ORTHO05D009552 5.3e-31 138.3 169 42.0
Duzib147G1262 Durio zibethinus HOM05D007495 ORTHO05D009552 7.0e-31 137.9 141 47.5
FvH4_3g30910 Fragaria vesca HOM05D007495 ORTHO05D009552 9.1e-31 137.5 135 49.6
PSO210G3489 Papaver somniferum HOM05D007495 ORTHO05D009552 4.5e-30 135.2 154 44.8
PSO210G2188 Papaver somniferum HOM05D007495 ORTHO05D009552 3.8e-29 132.1 154 44.2
Aa31LG5G8040 Aethionema arabicum HOM05D002446 ORTHO05D002941 1.5e-28 130.2 129 51.9
HPP92_026750 Vanilla planifolia HOM05D007495 ORTHO05D009552 2.5e-28 129.4 141 46.1
Gohir.A11G006200 Gossypium hirsutum HOM05D007495 ORTHO05D009552 7.2e-28 127.9 144 43.8
Gorai.007G006500 Gossypium raimondii HOM05D007495 ORTHO05D009552 4.7e-27 125.2 144 42.4
Duzib168G1093 Durio zibethinus HOM05D007495 ORTHO05D009552 1.8e-26 123.2 146 42.5
Gohir.D11G005300 Gossypium hirsutum HOM05D007495 ORTHO05D009552 5.2e-26 121.7 144 41.7
unitig_27.g25050 Utricularia gibba HOM05D007495 ORTHO05D009552 6.7e-26 121.3 152 43.4
CDE08G1192 Ceratophyllum demersum HOM05D007495 ORTHO05D009552 8.8e-26 120.9 134 44.8
Pp3c2_14140 Physcomitrium patens HOM05D007495 ORTHO05D009552 8.2e-24 114.4 150 40.0
CSS0034387 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 1.8e-23 113.2 117 48.7
CAN.G546.21 Capsicum annuum HOM05D007495 ORTHO05D009552 1.2e-22 110.5 96 52.1
Solyc01g034070.2 Solanum lycopersicum HOM05D007495 ORTHO05D009552 8.5e-21 104.4 125 43.2
arahy.Tifrunner.gnm1.ann1.48A6J1 Arachis hypogaea HOM05D007495 ORTHO05D009552 7.2e-20 101.3 85 58.8
QL01p015485 Quercus lobata HOM05D007495 ORTHO05D000007 7.2e-20 101.3 81 60.5
Thecc.09G349300 Theobroma cacao HOM05D007495 ORTHO05D009552 4.7e-19 98.6 93 49.5
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 8.8e-18 94.4 92 47.8
AagrBONN_evm.TU.Sc2ySwM_228.3308 Anthoceros agrestis HOM05D007495 ORTHO05D009552 4.1e-15 85.5 129 36.4
SEGI_19183 Sequoiadendron giganteum HOM05D007495 ORTHO05D009552 2.7e-14 82.8 95 41.1
TAR636G3027 Trochodendron aralioides HOM05D007495 ORTHO05D009552 1.0e-13 80.9 69 55.1
arahy.Tifrunner.gnm1.ann1.SCS43X Arachis hypogaea HOM05D007495 ORTHO05D009552 9.5e-12 74.3 58 56.9
arahy.Tifrunner.gnm1.ann1.U22N6I Arachis hypogaea HOM05D001167 ORTHO05D014890 9.8e-09 64.3 36 75.0


User provided reference genes

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