Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 0.0e+00 1597.8 861 100.0
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 0.0e+00 1491.5 859 94.9
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 0.0e+00 1231.9 865 78.3
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 0.0e+00 1219.1 829 78.3
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 0.0e+00 1150.6 817 75.2
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 0.0e+00 1115.1 809 69.8
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 2.2e-301 1038.9 898 65.5
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 6.7e-298 1027.3 900 65.0
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 2.1e-291 1005.7 792 65.0
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 8.7e-290 1000.3 814 66.5
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 1.8e-282 976.1 788 67.4
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 7.4e-281 970.7 823 65.2
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 3.4e-278 961.8 816 64.2
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 4.4e-273 944.9 813 62.5
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 1.5e-270 936.4 788 64.8
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 3.5e-270 935.3 816 59.8
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 2.2e-269 932.6 813 61.7
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 2.9e-269 932.2 799 62.8
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 2.9e-269 932.2 799 62.8
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 4.2e-268 928.3 814 63.0
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 9.4e-268 927.2 805 63.0
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.8e-264 915.6 808 62.6
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 6.3e-264 914.4 806 61.0
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 6.3e-264 914.4 817 58.9
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 1.8e-263 912.9 797 62.1
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 7.7e-262 907.5 805 61.2
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.7e-261 906.4 821 60.4
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 1.7e-261 906.4 810 59.6
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 2.2e-261 906.0 804 60.0
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 1.2e-259 900.2 822 61.3
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 2.1e-259 899.4 825 61.0
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 8.8e-258 894.0 808 62.7
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 2.6e-257 892.5 819 59.1
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 5.7e-257 891.3 800 60.6
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 9.7e-257 890.6 804 60.4
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 4.1e-255 885.2 803 60.0
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 1.6e-254 883.2 797 60.4
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 7.7e-254 880.9 753 60.4
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 1.3e-253 880.2 770 61.6
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 1.3e-253 880.2 821 59.2
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 2.1e-251 872.8 732 62.3
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 2.7e-251 872.5 730 62.1
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 5.7e-249 864.8 819 55.4
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 1.3e-248 863.6 737 59.0
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 2.2e-248 862.8 730 59.2
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 4.8e-248 861.7 788 60.2
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 4.8e-248 861.7 803 58.5
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 1.8e-247 859.8 794 57.2
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 7.0e-247 857.8 806 60.3
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 7.0e-247 857.8 574 73.0
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 3.5e-246 855.5 804 60.0
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 4.5e-246 855.1 800 60.2
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 1.0e-245 854.0 726 59.2
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 1.7e-245 853.2 695 64.6
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 5.0e-245 851.7 746 61.3
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 1.1e-244 850.5 790 59.6
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 1.9e-244 849.7 741 61.5
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 1.2e-243 847.0 785 59.7
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 6.8e-242 841.3 830 58.1
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 5.7e-241 838.2 788 59.4
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 2.2e-240 836.3 799 58.3
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 6.3e-240 834.7 791 58.4
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 7.0e-239 831.2 517 72.0
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 1.6e-238 830.1 787 60.6
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 1.0e-237 827.4 721 63.5
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 1.7e-237 826.6 803 55.9
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 2.9e-237 825.9 690 64.5
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 4.3e-236 822.0 820 55.7
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 7.3e-236 821.2 680 61.6
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 9.5e-236 820.8 815 57.4
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 2.1e-235 819.7 778 57.5
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 7.5e-233 811.2 801 58.2
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 1.2e-230 803.9 788 58.2
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 2.7e-230 802.7 885 54.0
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 2.8e-227 792.7 786 57.4
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 1.1e-226 790.8 764 55.8
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 1.8e-226 790.0 800 56.9
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 8.9e-226 787.7 789 57.7
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 4.1e-223 778.9 801 54.3
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 7.8e-222 774.6 535 66.2
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 3.0e-221 772.7 723 59.6
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 5.1e-221 771.9 804 56.7
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 2.5e-220 769.6 803 56.8
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 4.7e-219 765.4 760 58.2
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 2.2e-216 756.5 753 55.4
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 1.4e-210 737.3 630 64.9
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 1.4e-210 737.3 752 54.4
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 4.2e-175 619.4 526 61.4
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.1e-159 568.2 597 56.8
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 4.8e-155 552.7 336 73.2
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 1.3e-152 544.7 463 57.2
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 6.5e-152 542.3 521 52.0
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 2.1e-150 537.3 826 43.8
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 8.5e-144 515.4 500 58.4
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 5.4e-138 496.1 412 57.0
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 2.3e-133 480.7 384 59.6
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 4.1e-130 469.9 416 61.5
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.1e-126 457.6 264 76.5
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 5.2e-109 399.8 349 54.4
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 3.3e-103 380.6 402 48.8
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 6.4e-91 339.7 535 44.7
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 3.1e-85 320.9 334 60.8
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 8.1e-78 296.2 187 69.0
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 2.5e-71 274.6 339 44.8
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 8.4e-67 259.6 194 62.4
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 2.0e-60 238.4 329 56.5
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 6.3e-54 216.9 182 55.5
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-32 143.7 355 31.0
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.1e-29 136.3 109 59.6
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.1e-26 126.3 78 71.8
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.1e-18 99.8 112 43.8
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.5e-18 98.6 80 58.8
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 6.8e-16 90.5 72 48.6
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 1.7e-11 75.9 249 37.8


User provided reference genes

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