Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 3.8e-45 184.5 94 100.0
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 7.3e-41 170.2 95 92.6
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.1e-33 146.4 95 84.2
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 1.9e-25 119.0 94 67.0
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 7.4e-25 117.1 96 68.8
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 9.6e-25 116.7 94 64.9
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.6e-24 115.9 94 66.0
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.7e-24 114.8 96 67.7
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.4e-23 112.8 95 67.4
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 6.9e-23 110.5 97 59.8
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 5.8e-22 107.5 95 55.8
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 1.9e-20 102.4 95 60.0
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.2e-20 101.7 97 58.8
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.5e-20 100.9 96 54.2
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.0e-19 97.4 96 53.1
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.9e-19 97.1 96 54.2
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 7.9e-19 97.1 95 50.5
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.8e-18 95.9 96 53.1
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.9e-18 94.7 96 56.2
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 5.1e-18 94.4 95 51.6
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 5.1e-18 94.4 94 47.9
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.1e-18 94.4 92 55.4
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.1e-18 94.4 92 55.4
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.1e-17 93.2 95 48.4
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-17 93.2 94 52.1
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 1.1e-17 93.2 95 50.5
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.1e-17 93.2 96 53.1
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.5e-17 92.8 86 55.8
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-17 92.0 94 51.1
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.3e-17 91.7 95 52.6
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.3e-17 91.7 95 47.4
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.7e-17 90.9 95 47.4
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.2e-16 89.0 96 52.1
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.2e-16 89.0 96 51.0
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-16 88.6 95 47.4
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.8e-16 87.8 95 50.5
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.1e-15 86.7 97 54.6
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 1.8e-15 85.9 95 50.5
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 2.4e-15 85.5 95 48.4
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.1e-15 85.1 98 52.0
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 4.1e-15 84.7 96 47.9
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.3e-15 84.3 90 53.3
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.9e-15 84.0 86 53.5
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 6.9e-15 84.0 96 51.0
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 2.0e-14 82.4 95 50.5
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 5.9e-14 80.9 95 46.3
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 5.9e-14 80.9 88 50.0
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 5.9e-14 80.9 95 50.5
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 7.7e-14 80.5 87 49.4
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.0e-13 80.1 93 50.5
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.0e-13 80.1 94 50.0
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.0e-13 80.1 95 50.5
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-13 79.7 95 50.5
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.7e-13 79.3 102 49.0
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.7e-13 79.3 68 52.9
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.2e-13 79.0 102 49.0
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.9e-13 78.6 62 56.5
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 3.8e-13 78.2 86 50.0
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 5.0e-13 77.8 95 47.4
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.0e-13 77.8 95 46.3
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 6.5e-13 77.4 86 51.2
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 6.5e-13 77.4 89 48.3
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 8.5e-13 77.0 89 48.3
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.9e-12 75.9 96 46.9
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.5e-12 74.3 83 45.8
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 7.2e-12 73.9 97 50.5
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.2e-11 73.2 93 38.7
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.2e-11 73.2 94 43.6
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.6e-11 72.8 92 42.4
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.1e-11 72.4 91 44.0
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.6e-11 71.6 85 47.1
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.6e-11 71.6 62 56.5
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 6.1e-11 70.9 88 50.0
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 7.9e-11 70.5 96 40.6
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.0e-10 70.1 104 41.3
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.0e-10 70.1 85 44.7
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.4e-10 69.7 91 45.1
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.8e-10 69.3 87 42.5
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 3.0e-10 68.6 80 46.2
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 5.1e-10 67.8 93 39.8
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.1e-10 67.8 88 48.9
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 8.8e-10 67.0 83 49.4
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 8.8e-10 67.0 89 44.9
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 8.8e-10 67.0 89 43.8
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.5e-09 66.2 95 43.2
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.5e-09 66.2 86 41.9
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.0e-09 65.9 92 43.5
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-09 65.5 87 43.7
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 2.5e-09 65.5 86 46.5
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 2.5e-09 65.5 93 44.1
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.3e-09 65.1 87 43.7
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 4.3e-09 64.7 88 45.5
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.3e-09 64.7 86 44.2
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 4.3e-09 64.7 92 39.1
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 5.7e-09 64.3 99 42.4
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.7e-09 64.3 48 64.6
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 5.7e-09 64.3 87 42.5
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 7.4e-09 63.9 93 41.9
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 7.4e-09 63.9 93 41.9
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 7.4e-09 63.9 82 43.9
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 9.7e-09 63.5 92 41.3
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 9.7e-09 63.5 92 43.5
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 9.7e-09 63.5 92 43.5
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 9.7e-09 63.5 96 44.8
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 9.7e-09 63.5 94 45.7
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.3e-08 63.2 93 46.2
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 1.3e-08 63.2 93 46.2
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.3e-08 63.2 89 46.1
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.3e-08 63.2 88 43.2
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.3e-08 63.2 89 43.8
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.7e-08 62.8 95 43.2
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 2.2e-08 62.4 86 44.2
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.2e-08 62.4 93 40.9
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 2.8e-08 62.0 92 42.4
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.8e-08 62.0 96 40.6
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.8e-08 62.0 53 58.5
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 2.8e-08 62.0 93 39.8
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 2.8e-08 62.0 101 49.5
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 3.7e-08 61.6 89 47.2
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 6.3e-08 60.8 86 45.3
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 6.3e-08 60.8 99 38.4
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 6.3e-08 60.8 93 43.0
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 8.2e-08 60.5 93 43.0
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 8.2e-08 60.5 93 43.0
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 8.2e-08 60.5 84 42.9
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 44 59.1
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.1e-07 60.1 93 41.9
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-07 60.1 93 41.9
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 1.1e-07 60.1 95 41.1
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 1.4e-07 59.7 93 43.0
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.4e-07 59.7 90 40.0
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.8e-07 59.3 93 46.2
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 1.8e-07 59.3 99 36.4
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 4.1e-07 58.2 84 44.0
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.1e-07 58.2 65 53.8
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 6.9e-07 57.4 97 40.2
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 6.9e-07 57.4 86 38.4
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 6.9e-07 57.4 88 44.3
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 9.1e-07 57.0 88 40.9
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 9.1e-07 57.0 64 51.6
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.2e-06 56.6 94 39.4
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.2e-06 56.6 86 40.7
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 1.5e-06 56.2 35 71.4
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.5e-06 56.2 64 45.3
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 2.0e-06 55.8 77 41.6
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.6e-06 55.5 88 37.5
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.6e-06 55.5 83 38.6
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.4e-06 55.1 35 62.9
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 4.5e-06 54.7 91 39.6
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 4.5e-06 54.7 81 42.0
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.9e-06 54.3 36 66.7
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 5.9e-06 54.3 32 68.8
MD05G1105500 Malus domestica HOM05D001756 ORTHO05D001581 7.7e-06 53.9 92 44.6
MD10G1110000 Malus domestica HOM05D001756 ORTHO05D001581 7.7e-06 53.9 82 45.1
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 7.7e-06 53.9 41 61.0


User provided reference genes

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