Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 8.3e-85 317.0 160 100.0
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.2e-83 313.2 159 98.1
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 2.3e-79 298.9 159 93.1
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.4e-76 289.7 160 89.4
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 3.5e-75 285.0 158 88.6
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 7.8e-75 283.9 159 88.1
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 2.3e-74 282.3 159 87.4
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 3.8e-74 281.6 159 85.5
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 6.6e-74 280.8 145 95.2
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.1e-73 280.0 159 86.8
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 4.3e-73 278.1 159 84.9
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 4.3e-73 278.1 159 84.9
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 2.1e-72 275.8 159 83.0
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 2.8e-72 275.4 159 83.6
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 6.1e-72 274.2 158 82.9
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 8.0e-72 273.9 159 81.8
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 1.0e-71 273.5 159 82.4
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.0e-71 273.5 159 81.1
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 1.4e-71 273.1 159 83.0
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 1.8e-71 272.7 159 81.8
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 2.3e-71 272.3 159 81.1
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.3e-71 272.3 159 83.6
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 2.3e-71 272.3 159 81.1
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 3.1e-71 271.9 159 81.8
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.2e-71 271.2 159 81.1
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 6.8e-71 270.8 159 83.0
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 6.8e-71 270.8 159 83.0
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 6.8e-71 270.8 159 81.8
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 1.2e-70 270.0 159 79.2
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.5e-70 269.6 159 81.1
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.5e-70 269.6 159 80.5
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 1.5e-70 269.6 159 82.4
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.5e-70 269.6 158 82.3
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.0e-70 269.2 159 81.8
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 2.0e-70 269.2 159 83.0
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 3.4e-70 268.5 159 82.4
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 4.4e-70 268.1 160 82.5
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 4.4e-70 268.1 159 82.4
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.4e-70 268.1 159 81.1
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 4.4e-70 268.1 159 80.5
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 5.8e-70 267.7 158 81.6
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.8e-70 267.7 159 81.1
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.8e-70 267.7 159 81.1
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 7.5e-70 267.3 159 80.5
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 7.5e-70 267.3 159 81.1
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 9.8e-70 266.9 159 81.1
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 9.8e-70 266.9 144 91.7
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 9.8e-70 266.9 159 81.8
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 9.8e-70 266.9 159 80.5
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.3e-69 266.5 159 78.6
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 4.9e-69 264.6 159 79.9
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 4.9e-69 264.6 159 80.5
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 6.4e-69 264.2 159 79.2
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 6.4e-69 264.2 159 79.2
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 6.4e-69 264.2 154 81.2
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 8.3e-69 263.8 157 79.6
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.1e-68 263.5 159 79.9
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.1e-68 263.5 159 79.2
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.4e-68 263.1 159 79.2
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 1.9e-68 262.7 159 79.2
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.9e-68 262.7 159 78.0
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 3.2e-68 261.9 182 73.6
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 3.2e-68 261.9 159 79.2
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 4.1e-68 261.5 172 79.1
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 4.1e-68 261.5 157 82.2
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 5.4e-68 261.2 158 77.2
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 7.0e-68 260.8 159 78.0
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.0e-68 260.8 159 78.0
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 9.2e-68 260.4 159 78.0
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 9.2e-68 260.4 159 79.2
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.2e-67 260.0 157 80.3
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 2.0e-67 259.2 151 82.8
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 2.0e-67 259.2 151 83.4
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 3.5e-67 258.5 151 82.1
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 4.6e-67 258.1 159 77.4
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 4.6e-67 258.1 151 82.8
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 4.6e-67 258.1 145 84.8
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 6.0e-67 257.7 159 75.5
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 7.8e-67 257.3 158 77.8
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.0e-66 256.9 157 77.7
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.0e-66 256.9 157 77.7
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.3e-66 256.5 145 84.1
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.3e-66 256.5 158 77.8
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.3e-66 256.5 159 77.4
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.3e-66 255.8 151 82.1
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 5.0e-66 254.6 159 74.8
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 5.0e-66 254.6 159 76.7
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 6.6e-66 254.2 158 77.2
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 6.6e-66 254.2 159 76.1
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.5e-65 253.1 159 74.2
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.9e-65 252.7 150 81.3
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 3.3e-65 251.9 151 77.5
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 1.2e-64 250.0 159 76.1
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 2.8e-64 248.8 151 78.1
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 2.8e-64 248.8 151 78.1
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 3.6e-64 248.4 159 74.2
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 4.7e-64 248.1 138 87.7
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 4.7e-64 248.1 137 87.6
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 4.7e-64 248.1 159 74.2
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 8.0e-64 247.3 159 73.6
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.1e-63 246.9 158 75.3
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.1e-63 245.4 144 80.6
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.1e-63 245.4 148 79.7
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 3.1e-63 245.4 159 73.6
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 4.0e-63 245.0 151 78.8
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 6.8e-63 244.2 159 72.3
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 6.8e-63 244.2 142 81.0
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.7e-61 239.6 158 72.2
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 6.4e-61 237.7 151 74.2
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.6e-59 233.0 159 71.7
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 2.7e-59 232.3 159 69.8
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.5e-59 231.9 137 82.5
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.0e-58 230.3 157 68.8
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 6.6e-58 227.6 135 85.9
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 7.3e-57 224.2 153 69.9
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.6e-56 223.0 156 72.4
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 9.2e-52 207.2 155 68.4
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.6e-51 206.5 159 66.0
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 1.2e-48 196.8 141 73.0
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 3.6e-48 195.3 149 59.1
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.4e-47 193.4 114 85.1
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 5.2e-47 191.4 144 66.0
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 5.2e-47 191.4 117 76.1
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 6.8e-47 191.0 109 85.3
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 4.4e-46 188.3 117 81.2
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 2.9e-45 185.7 158 55.1
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 3.8e-45 185.3 141 66.7
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 2.5e-41 172.6 100 85.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 4.7e-40 168.3 150 56.0
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-37 160.2 110 70.9
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.7e-37 159.8 111 71.2
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.5e-33 146.7 77 87.0
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.8e-32 142.5 119 62.2
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-31 140.6 155 50.3
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 2.6e-30 136.0 109 64.2
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 3.4e-30 135.6 93 73.1
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.4e-29 131.3 77 76.6
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.4e-28 129.4 77 79.2
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.2e-28 129.0 68 85.3
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.0e-26 124.0 136 50.0
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 8.1e-24 114.4 120 56.7
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 5.3e-23 111.7 64 85.9
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 6.9e-23 111.3 168 42.9
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 2.1e-19 99.8 64 76.6
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.9e-19 97.8 77 62.3
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.3e-18 97.1 52 86.5
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 8.7e-18 94.4 58 75.9
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.9e-17 93.2 66 68.2
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 1.2e-14 84.0 58 70.7
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.1e-07 59.3 33 78.8


User provided reference genes

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