Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 9.5e-147 524.2 445 100.0
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 3.0e-116 422.9 478 83.7
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 7.1e-86 322.0 493 68.6
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 2.5e-83 313.5 470 70.6
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 7.4e-83 312.0 475 72.4
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 3.0e-76 290.0 470 64.0
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 9.1e-73 278.5 488 67.2
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 4.5e-72 276.2 479 61.8
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 6.3e-58 229.2 446 57.0
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 5.3e-57 226.1 467 64.0
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 2.1e-53 214.2 490 62.2
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 5.4e-49 199.5 482 52.5
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 2.4e-33 147.5 448 59.8
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.2e-33 147.1 486 58.0
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 4.1e-33 146.7 507 54.6
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 7.0e-33 146.0 471 58.2
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.2e-32 145.2 479 59.1
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 2.7e-32 144.1 476 58.8
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 3.5e-32 143.7 499 50.1
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 3.9e-31 140.2 486 51.0
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 1.5e-30 138.3 498 44.4
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 3.3e-30 137.1 451 59.6
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.2e-29 135.2 482 49.0
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 2.1e-29 134.4 243 43.6
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.4e-28 131.7 482 49.6
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.4e-28 131.7 470 50.6
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 1.2e-27 128.6 240 41.7
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 3.4e-27 127.1 470 54.7
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 7.5e-27 125.9 462 57.4
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 9.8e-27 125.6 488 55.1
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 1.3e-26 125.2 234 38.9
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.3e-26 125.2 462 55.4
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 2.9e-26 124.0 459 53.2
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 8.3e-26 122.5 485 52.4
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 2.4e-25 120.9 447 55.3
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 4.1e-25 120.2 476 54.6
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 2.7e-24 117.5 492 53.5
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 6.6e-23 112.8 277 33.6
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 6.6e-23 112.8 277 33.6
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 8.6e-23 112.5 456 56.6
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 1.9e-22 111.3 477 54.1
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 1.9e-22 111.3 250 36.4
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 2.5e-22 110.9 454 56.8
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 9.5e-22 109.0 243 36.6
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 9.5e-22 109.0 289 34.9
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 2.1e-21 107.8 498 52.6
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 1.4e-20 105.1 440 56.4
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 1.4e-20 105.1 483 53.2
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 3.1e-20 104.0 557 48.3
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 1.2e-19 102.1 480 54.8
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 1.2e-19 102.1 458 46.5
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 2.0e-19 101.3 272 32.4
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 2.0e-19 101.3 462 45.9
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.6e-19 100.9 488 42.8
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 2.6e-19 100.9 490 52.2
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 2.6e-19 100.9 263 35.0
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 3.4e-19 100.5 441 54.9
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 4.4e-19 100.1 406 57.9
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 5.8e-19 99.8 497 41.2
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 2.9e-18 97.4 475 41.7
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 6.4e-18 96.3 503 46.5
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 2.4e-17 94.4 469 36.7
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 2.4e-17 94.4 365 62.2
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 4.1e-17 93.6 368 61.7
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 1.2e-16 92.0 239 34.7
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 4.6e-16 90.1 451 47.5
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 6.0e-16 89.7 307 32.6
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 1.3e-15 88.6 460 34.6
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 6.6e-15 86.3 248 35.1
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 6.6e-15 86.3 459 42.9
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 8.6e-15 85.9 279 31.5
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 1.1e-14 85.5 448 42.0
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.9e-14 84.7 500 50.6
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 1.9e-14 84.7 467 40.7
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 4.3e-14 83.6 481 48.9
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 5.6e-14 83.2 455 52.3
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 9.5e-14 82.4 469 53.1
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.1e-13 81.3 269 32.7
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 1.1e-12 79.0 512 39.1
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 1.8e-12 78.2 274 32.8
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 6.8e-12 76.3 474 37.3
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 8.9e-12 75.9 58 62.1
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 5.8e-11 73.2 58 60.3
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 9.9e-11 72.4 481 44.9
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.7e-10 70.5 401 58.1
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 6.4e-10 69.7 153 34.0
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 7.1e-09 66.2 476 49.8
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.6e-08 65.1 65 53.8
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 1.7e-07 61.6 507 47.7
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 8.6e-07 59.3 468 49.1
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 1.5e-06 58.5 246 29.3


User provided reference genes

Program Settings