Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 3.2e-62 241.5 115 100.0
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 2.5e-19 99.0 49 89.8
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 2.5e-19 99.0 49 89.8
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 3.3e-19 98.6 49 89.8
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 6.3e-18 94.4 50 84.0
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 8.2e-18 94.0 50 82.0
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 3.1e-17 92.0 50 82.0
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 3.1e-17 92.0 50 82.0
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 4.1e-17 91.7 50 80.0
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 4.1e-17 91.7 49 83.7
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 4.1e-17 91.7 50 78.0
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 6.9e-17 90.9 50 78.0
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 6.9e-17 90.9 49 81.6
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 2.6e-16 89.0 49 77.6
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 3.4e-16 88.6 49 81.6
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 4.5e-16 88.2 49 81.6
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 4.5e-16 88.2 49 79.6
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 5.9e-16 87.8 49 79.6
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 5.9e-16 87.8 49 79.6
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 6.5e-15 84.3 49 77.6
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 8.5e-15 84.0 49 75.5
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 2.5e-14 82.4 49 75.5
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 3.2e-14 82.0 49 73.5
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 4.2e-14 81.6 50 68.0
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 4.2e-14 81.6 44 77.3
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 5.5e-14 81.3 49 73.5
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.2e-13 80.1 50 66.0
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 2.1e-13 79.3 50 68.0
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 2.1e-13 79.3 50 68.0
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 2.1e-13 79.3 49 71.4
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 2.7e-13 79.0 50 66.0
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 2.7e-13 79.0 49 71.4
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 4.6e-13 78.2 49 69.4
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 4.6e-13 78.2 49 67.3
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 6.1e-13 77.8 50 66.0
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 6.1e-13 77.8 50 66.0
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 7.9e-13 77.4 50 72.0
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 7.9e-13 77.4 50 66.0
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 1.0e-12 77.0 50 66.0
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 1.4e-12 76.6 52 63.5
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 1.4e-12 76.6 49 67.3
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 1.4e-12 76.6 50 64.0
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 1.8e-12 76.3 50 70.0
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 2.3e-12 75.9 50 70.0
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 3.0e-12 75.5 49 67.3
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 3.9e-12 75.1 50 70.0
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 5.1e-12 74.7 48 66.7
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 5.1e-12 74.7 50 62.0
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 5.1e-12 74.7 50 66.0
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 6.7e-12 74.3 49 67.3
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 6.7e-12 74.3 49 67.3
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 6.7e-12 74.3 50 66.0
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 8.8e-12 73.9 50 68.0
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 8.8e-12 73.9 50 64.0
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 8.8e-12 73.9 50 64.0
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 1.1e-11 73.6 49 65.3
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 1.1e-11 73.6 50 60.0
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 1.5e-11 73.2 50 68.0
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.5e-11 73.2 52 63.5
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 1.5e-11 73.2 49 67.3
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 2.0e-11 72.8 50 66.0
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 2.0e-11 72.8 49 67.3
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 2.0e-11 72.8 49 63.3
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 2.0e-11 72.8 50 62.0
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 2.0e-11 72.8 50 62.0
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 2.5e-11 72.4 48 72.9
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.5e-11 72.4 54 61.1
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.5e-11 72.4 54 61.1
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.5e-11 72.4 54 61.1
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 2.5e-11 72.4 49 65.3
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 2.5e-11 72.4 54 61.1
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.5e-11 72.4 50 68.0
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 3.3e-11 72.0 50 62.0
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 3.3e-11 72.0 50 64.0
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 3.3e-11 72.0 49 67.3
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 3.3e-11 72.0 50 68.0
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 4.3e-11 71.6 48 64.6
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 4.3e-11 71.6 49 63.3
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 4.3e-11 71.6 50 62.0
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 5.7e-11 71.2 50 62.0
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 5.7e-11 71.2 50 66.0
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 7.4e-11 70.9 50 62.0
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 7.4e-11 70.9 50 66.0
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 9.7e-11 70.5 50 62.0
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 9.7e-11 70.5 49 61.2
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 9.7e-11 70.5 48 66.7
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 1.3e-10 70.1 48 66.7
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 1.3e-10 70.1 49 65.3
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.3e-10 70.1 50 66.0
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.3e-10 70.1 49 63.3
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 1.7e-10 69.7 49 65.3
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 1.7e-10 69.7 49 61.2
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 1.7e-10 69.7 49 59.2
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.2e-10 69.3 50 64.0
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 2.2e-10 69.3 49 65.3
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 2.2e-10 69.3 50 60.0
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 2.2e-10 69.3 49 59.2
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 2.2e-10 69.3 49 59.2
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 3.7e-10 68.6 54 59.3
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.7e-10 68.6 54 59.3
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 4.8e-10 68.2 50 64.0
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 4.8e-10 68.2 50 60.0
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 6.3e-10 67.8 52 65.4
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 6.3e-10 67.8 50 60.0
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 6.3e-10 67.8 51 60.8
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 8.2e-10 67.4 50 58.0
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 8.2e-10 67.4 49 61.2
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 1.1e-09 67.0 50 58.0
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 1.1e-09 67.0 49 65.3
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.1e-09 67.0 63 52.4
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 1.4e-09 66.6 51 64.7
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 1.8e-09 66.2 50 58.0
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.8e-09 66.2 50 60.0
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 1.8e-09 66.2 50 58.0
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.4e-09 65.9 50 62.0
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 3.1e-09 65.5 50 56.0
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 3.1e-09 65.5 50 56.0
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 3.1e-09 65.5 50 56.0
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 3.1e-09 65.5 50 62.0
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 4.1e-09 65.1 49 57.1
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 4.1e-09 65.1 49 57.1
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 5.3e-09 64.7 50 56.0
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 5.3e-09 64.7 50 56.0
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 5.3e-09 64.7 50 56.0
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 5.3e-09 64.7 50 58.0
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 6.9e-09 64.3 49 57.1
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 1.2e-08 63.5 50 60.0
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.2e-08 63.5 50 60.0
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.5e-08 63.2 49 63.3
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.5e-08 63.2 50 58.0
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 3.4e-08 62.0 52 55.8
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 4.5e-08 61.6 49 59.2
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 5.9e-08 61.2 50 46.0
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 5.9e-08 61.2 49 63.3
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 8.5e-07 57.4 50 58.0
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.4e-06 56.6 38 63.2
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 1.4e-06 56.6 47 53.2
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 2.5e-06 55.8 50 52.0


User provided reference genes

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