Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 6.7e-63 243.8 121 100.0
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 2.9e-50 201.8 123 85.4
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 3.6e-48 194.9 125 77.6
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 3.5e-43 178.3 125 77.6
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 4.5e-35 151.4 134 65.7
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 5.0e-34 147.9 127 63.8
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 1.6e-32 142.9 114 66.7
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 2.3e-31 139.0 112 65.2
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 6.8e-31 137.5 135 62.2
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 6.8e-31 137.5 127 60.6
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 7.0e-28 127.5 137 54.0
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 1.0e-26 123.6 141 53.9
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 2.3e-26 122.5 140 53.6
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.8e-23 112.8 133 54.9
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.8e-23 112.8 132 56.1
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 2.3e-23 112.5 122 54.9
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 4.0e-23 111.7 133 55.6
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 4.0e-23 111.7 133 55.6
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 8.9e-23 110.5 113 55.8
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 8.9e-23 110.5 129 52.7
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.2e-22 110.2 123 53.7
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.5e-22 109.8 123 53.7
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.5e-22 109.8 123 53.7
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 3.4e-22 108.6 117 56.4
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 5.8e-22 107.8 117 54.7
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 7.5e-22 107.5 124 57.3
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 2.9e-21 105.5 123 54.5
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 4.9e-21 104.8 121 54.5
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.9e-21 104.8 123 52.0
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 8.3e-21 104.0 123 52.0
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 8.3e-21 104.0 135 51.1
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 2.4e-20 102.4 111 58.6
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 2.4e-20 102.4 128 51.6
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.1e-20 101.7 137 51.8
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 7.0e-20 100.9 130 51.5
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 1.2e-19 100.1 103 58.3
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 2.0e-19 99.4 119 52.9
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.7e-19 99.0 137 50.4
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 3.5e-19 98.6 117 52.1
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 7.8e-19 97.4 144 47.9
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 1.0e-18 97.1 123 52.8
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 1.3e-18 96.7 124 53.2
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.7e-18 96.3 123 54.5
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 1.7e-18 96.3 123 52.8
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.0e-18 95.5 123 52.0
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 3.9e-18 95.1 114 46.5
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.0e-18 94.7 123 54.5
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 6.6e-18 94.4 136 45.6
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.9e-17 92.8 138 48.6
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 9.5e-17 90.5 123 49.6
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 2.8e-16 89.0 125 46.4
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.8e-16 89.0 106 52.8
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 2.8e-16 89.0 127 49.6
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 6.2e-16 87.8 125 46.4
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 1.1e-15 87.0 108 49.1
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 1.4e-15 86.7 106 52.8
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 5.2e-15 84.7 117 45.3
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 3.4e-14 82.0 112 50.0
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 4.4e-14 81.6 126 49.2
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 9.8e-14 80.5 121 45.5
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 9.8e-14 80.5 93 51.6
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 3.7e-13 78.6 123 43.1
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 3.7e-13 78.6 123 43.1
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.9e-13 78.2 106 50.9
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 8.3e-13 77.4 121 44.6
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 1.1e-12 77.0 123 43.9
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 1.4e-12 76.6 119 42.0
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 1.9e-12 76.3 97 46.4
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 3.2e-12 75.5 109 45.0
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 3.2e-12 75.5 85 54.1
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 3.2e-12 75.5 106 49.1
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 4.1e-12 75.1 125 39.2
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 5.4e-12 74.7 143 39.9
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 5.4e-12 74.7 97 46.4
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 7.1e-12 74.3 100 47.0
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 7.1e-12 74.3 104 43.3
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 7.1e-12 74.3 117 42.7
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 1.6e-11 73.2 122 42.6
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 2.1e-11 72.8 126 42.9
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 3.5e-11 72.0 122 41.8
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 4.6e-11 71.6 119 44.5
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 2.3e-10 69.3 99 43.4
Phvul.008G166200 Phaseolus vulgaris HOM05D011727 ORTHO05D004912 8.6e-10 67.4 105 43.8
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 1.1e-09 67.0 104 43.3
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 1.1e-09 67.0 103 42.7
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.1e-09 67.0 96 45.8
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 1.5e-09 66.6 101 44.6
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 1.9e-09 66.2 101 44.6
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 1.9e-09 66.2 85 49.4
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 3.3e-09 65.5 96 43.8
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 4.3e-09 65.1 91 45.1
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.3e-09 65.1 97 48.5
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 5.6e-09 64.7 100 43.0
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.6e-09 64.7 97 47.4
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 5.6e-09 64.7 97 47.4
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 7.3e-09 64.3 103 44.7
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 7.3e-09 64.3 91 50.5
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 1.2e-08 63.5 104 40.4
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 2.1e-08 62.8 100 43.0
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 2.1e-08 62.8 91 47.3
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 2.1e-08 62.8 105 43.8
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 2.1e-08 62.8 99 41.4
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 2.8e-08 62.4 115 38.3
Os04g0624701 Oryza sativa ssp. japonica HOM05D007398 ORTHO05D004912 4.7e-08 61.6 105 40.0
AUR62015784 Chenopodium quinoa HOM05D007398 ORTHO05D004912 6.2e-08 61.2 115 37.4
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 8.1e-08 60.8 93 44.1
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 1.1e-07 60.5 91 44.0
Glyma.14G163600 Glycine max HOM05D011727 ORTHO05D004912 1.4e-07 60.1 100 44.0
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 3.1e-07 58.9 104 41.3
Phvul.008G166400 Phaseolus vulgaris HOM05D011727 ORTHO05D004912 3.1e-07 58.9 73 49.3
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 6.8e-07 57.8 99 41.4
Zm00001eb070220 Zea mays HOM05D007398 ORTHO05D004912 6.8e-07 57.8 105 39.0
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 8.9e-07 57.4 105 38.1
Zm00001eb207520 Zea mays HOM05D067159 ORTHO05D050012 8.9e-07 57.4 109 39.4
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 1.2e-06 57.0 98 43.9
VMungo0647G2151 Vigna mungo HOM05D011727 ORTHO05D004912 1.2e-06 57.0 104 39.4
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 2.6e-06 55.8 98 41.8
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 2.6e-06 55.8 94 43.6
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 3.4e-06 55.5 94 39.4
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 3.4e-06 55.5 98 41.8
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 3.4e-06 55.5 98 41.8
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 5.8e-06 54.7 95 42.1
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 9.9e-06 53.9 98 40.8


User provided reference genes

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