Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 2.9e-50 201.4 92 100.0
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 2.1e-48 195.3 92 96.7
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 8.2e-45 183.3 92 88.0
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 1.4e-44 182.6 90 90.0
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 1.2e-43 179.5 91 85.7
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 1.7e-42 175.6 90 88.9
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 3.8e-42 174.5 90 86.7
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 3.8e-42 174.5 90 86.7
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 3.8e-42 174.5 90 86.7
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 3.8e-42 174.5 90 86.7
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 1.1e-38 162.9 92 80.4
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 2.2e-37 158.7 84 84.5
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 2.8e-37 158.3 84 81.0
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 6.3e-37 157.1 83 84.3
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 1.8e-36 155.6 84 79.8
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 5.3e-36 154.1 82 81.7
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 5.3e-36 154.1 82 81.7
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 5.3e-36 154.1 82 81.7
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 5.3e-36 154.1 84 79.8
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 7.0e-36 153.7 83 80.7
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 7.0e-36 153.7 83 83.1
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 9.1e-36 153.3 83 81.9
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 9.1e-36 153.3 84 82.1
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 9.1e-36 153.3 83 81.9
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 1.2e-35 152.9 84 82.1
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 1.2e-35 152.9 84 79.8
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 1.2e-35 152.9 84 81.0
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 1.2e-35 152.9 84 81.0
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 2.6e-35 151.8 84 78.6
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 2.6e-35 151.8 84 82.1
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 2.6e-35 151.8 84 79.8
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 2.6e-35 151.8 81 81.5
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 3.5e-35 151.4 83 79.5
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 4.5e-35 151.0 84 82.1
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 4.5e-35 151.0 82 84.1
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 4.5e-35 151.0 85 78.8
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 5.9e-35 150.6 84 82.1
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 5.9e-35 150.6 84 82.1
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 5.9e-35 150.6 84 82.1
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 5.9e-35 150.6 84 82.1
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 5.9e-35 150.6 84 82.1
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 5.9e-35 150.6 84 82.1
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 5.9e-35 150.6 84 82.1
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 5.9e-35 150.6 84 82.1
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 7.7e-35 150.2 84 76.2
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 1.3e-34 149.4 84 81.0
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 1.3e-34 149.4 84 81.0
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 1.3e-34 149.4 84 81.0
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.3e-34 149.4 85 76.5
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 1.3e-34 149.4 83 78.3
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 1.3e-34 149.4 84 78.6
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 1.7e-34 149.1 84 82.1
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 1.7e-34 149.1 81 81.5
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 1.7e-34 149.1 84 78.6
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 1.7e-34 149.1 80 81.2
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 1.7e-34 149.1 84 76.2
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 2.9e-34 148.3 84 81.0
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 2.9e-34 148.3 84 76.2
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 2.9e-34 148.3 80 81.2
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 3.8e-34 147.9 84 77.4
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 3.8e-34 147.9 80 80.0
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 6.5e-34 147.1 84 76.2
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 6.5e-34 147.1 84 76.2
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 6.5e-34 147.1 84 76.2
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 6.5e-34 147.1 84 75.0
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 6.5e-34 147.1 79 79.7
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 8.5e-34 146.7 83 78.3
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 8.5e-34 146.7 85 76.5
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.1e-33 146.4 84 76.2
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 1.1e-33 146.4 84 77.4
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 1.1e-33 146.4 81 77.8
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 1.1e-33 146.4 81 77.8
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 1.5e-33 146.0 77 84.4
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 1.9e-33 145.6 83 77.1
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 1.9e-33 145.6 84 76.2
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 1.9e-33 145.6 84 76.2
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.9e-33 145.6 81 79.0
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 1.9e-33 145.6 79 78.5
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 5.5e-33 144.1 81 80.2
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 9.4e-33 143.3 84 75.0
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 1.6e-32 142.5 87 77.0
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 1.6e-32 142.5 80 77.5
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 1.6e-32 142.5 81 77.8
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 2.1e-32 142.1 79 78.5
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 2.1e-32 142.1 79 78.5
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 4.7e-32 141.0 63 95.2
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 8.0e-32 140.2 83 73.5
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 1.0e-31 139.8 80 75.0
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 1.8e-31 139.0 81 77.8
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 2.3e-31 138.7 84 75.0
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 3.0e-31 138.3 83 74.7
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 5.2e-31 137.5 80 73.8
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 5.2e-31 137.5 104 64.4
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 5.2e-31 137.5 81 76.5
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 3.3e-30 134.8 85 72.9
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 7.5e-30 133.7 85 71.8
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 1.3e-29 132.9 84 73.8
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.8e-29 131.7 85 70.6
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.1e-28 128.3 69 79.7
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 8.5e-26 120.2 63 82.5
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 1.1e-25 119.8 63 82.5
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 9.4e-25 116.7 63 81.0
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 8.0e-24 113.6 63 73.0
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 2.2e-18 95.5 54 74.1
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 5.0e-18 94.4 47 83.0
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 6.5e-18 94.0 62 62.9
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 3.4e-14 81.6 40 87.5
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 6.3e-13 77.4 55 61.8
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 9.2e-12 73.6 56 55.4
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.8e-10 68.2 41 73.2
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 5.0e-10 67.8 41 75.6
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.6e-10 67.0 41 70.7
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.6e-08 62.8 37 73.0


User provided reference genes

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