Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G308000 Glycine max HOM05D002846 ORTHO05D002692 2.8e-64 248.4 125 100.0
Glyma.12G194600 Glycine max HOM05D002846 ORTHO05D002692 3.3e-57 224.9 124 92.7
Phvul.005G114400 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 3.8e-53 211.5 129 85.3
VMungo1080G0378 Vigna mungo HOM05D002846 ORTHO05D002692 1.6e-51 206.1 130 81.5
Lalb_Chr03g0028801 Lupinus albus HOM05D002846 ORTHO05D002692 4.0e-34 148.3 135 64.4
Lalb_Chr24g0393141 Lupinus albus HOM05D002846 ORTHO05D002692 3.4e-33 145.2 134 67.2
TPR.G4201 Trifolium pratense HOM05D002846 ORTHO05D002692 5.7e-33 144.4 137 62.8
Glyma.06G303502 Glycine max HOM05D002846 ORTHO05D002692 1.8e-31 139.4 134 62.7
Glyma.12G100400 Glycine max HOM05D002846 ORTHO05D002692 9.2e-31 137.1 133 62.4
Medtr2g088590 Medicago truncatula HOM05D002846 ORTHO05D002692 2.7e-30 135.6 128 62.5
Ca_26241_v3 Cicer arietinum L. HOM05D002846 ORTHO05D002692 3.5e-30 135.2 139 61.2
Phvul.011G105200 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 4.5e-30 134.8 140 60.0
Lj3g0002811 Lotus japonicus HOM05D002846 ORTHO05D002692 5.9e-30 134.4 134 60.4
Medtr4g046870 Medicago truncatula HOM05D002846 ORTHO05D002692 1.0e-29 133.7 134 60.4
Psat5g264560 Pisum sativum HOM05D002846 ORTHO05D002692 8.6e-29 130.6 127 63.0
VMungo0971G0001 Vigna mungo HOM05D002846 ORTHO05D002692 8.6e-29 130.6 135 60.0
Lalb_Chr01g0005591 Lupinus albus HOM05D002846 ORTHO05D002692 3.3e-28 128.6 114 65.8
Lalb_Chr19g0135751 Lupinus albus HOM05D002846 ORTHO05D002692 8.0e-27 124.0 116 62.1
TPR.G4595 Trifolium pratense HOM05D002846 ORTHO05D002692 8.9e-26 120.6 137 58.4
Lj3g0014799 Lotus japonicus HOM05D002846 ORTHO05D002692 1.5e-25 119.8 142 57.0
Thecc.02G312900 Theobroma cacao HOM05D002846 ORTHO05D002692 1.2e-22 110.2 130 52.3
TAR627G0783 Trochodendron aralioides HOM05D002846 ORTHO05D002692 4.6e-22 108.2 118 57.6
Ciclev10018295m.g Citrus clementina HOM05D002846 ORTHO05D002692 3.9e-21 105.1 94 63.8
TAR626G0168 Trochodendron aralioides HOM05D002846 ORTHO05D002692 3.9e-21 105.1 120 56.7
Dinv39698 Davidia involucrata HOM05D002846 ORTHO05D002692 3.3e-20 102.1 127 50.4
Cfa014424 Carpinus fangiana HOM05D002846 ORTHO05D002692 9.5e-20 100.5 117 55.6
Prupe.3G218700 Prunus persica HOM05D002846 ORTHO05D002692 1.2e-19 100.1 136 50.7
Potri.002G230300 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.6e-19 99.8 122 54.1
Potri.014G151900 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.6e-19 99.8 112 58.0
Duzib251G0618 Durio zibethinus HOM05D002846 ORTHO05D002692 4.7e-19 98.2 125 51.2
Sabra14G0115500 Salix brachista HOM05D002846 ORTHO05D002692 6.2e-19 97.8 104 60.6
Haze_12882 Corylus avellana HOM05D002846 ORTHO05D002692 1.4e-18 96.7 113 54.0
Sabra02G0175700 Salix brachista HOM05D002846 ORTHO05D002692 1.4e-18 96.7 122 52.5
TAR624G1330 Trochodendron aralioides HOM05D002846 ORTHO05D002692 4.0e-18 95.1 111 51.4
arahy.Tifrunner.gnm1.ann1.M85TWM Arachis hypogaea HOM05D002846 ORTHO05D002692 8.9e-18 94.0 146 45.2
MD17G1094800 Malus domestica HOM05D002846 ORTHO05D002692 2.0e-17 92.8 135 50.4
arahy.Tifrunner.gnm1.ann1.EJQ6C2 Arachis hypogaea HOM05D002846 ORTHO05D002692 3.4e-17 92.0 146 43.2
Dinv02736 Davidia involucrata HOM05D002846 ORTHO05D002692 3.4e-17 92.0 125 47.2
CANSAT64G1541 Cannabis sativa HOM05D002846 ORTHO05D002692 4.4e-17 91.7 151 43.7
MD09G1107000 Malus domestica HOM05D002846 ORTHO05D002692 7.5e-17 90.9 133 49.6
Gorai.005G150200 Gossypium raimondii HOM05D002846 ORTHO05D002692 2.9e-16 89.0 130 46.9
FAN05G4571 Fragaria x ananassa HOM05D002846 ORTHO05D002692 3.7e-16 88.6 114 50.9
GSVIVG01030606001 Vitis vinifera HOM05D002846 ORTHO05D002692 3.7e-16 88.6 120 50.8
Manes.12G075700 Manihot esculenta HOM05D002846 ORTHO05D002692 4.9e-16 88.2 110 53.6
FvH4_6g43420 Fragaria vesca HOM05D002846 ORTHO05D002692 6.4e-16 87.8 108 56.5
Manes.13G071601 Manihot esculenta HOM05D002846 ORTHO05D002692 6.4e-16 87.8 111 53.2
Duzib268G1153 Durio zibethinus HOM05D002846 ORTHO05D002692 8.3e-16 87.4 118 48.3
MBI02_g23957_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 8.3e-16 87.4 123 49.6
Gohir.A12G156600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 2.4e-15 85.9 113 51.3
Atru.chr6.3164 Acer truncatum HOM05D002846 ORTHO05D002692 3.2e-15 85.5 132 45.5
Actinidia09707 Actinidia chinensis HOM05D002846 ORTHO05D002692 4.1e-15 85.1 125 46.4
CSS0004659 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 7.0e-15 84.3 133 45.9
FAN14G0905 Fragaria x ananassa HOM05D002846 ORTHO05D002692 7.0e-15 84.3 99 56.6
Gohir.D02G134300 Gossypium hirsutum HOM05D002846 ORTHO05D002692 7.0e-15 84.3 115 48.7
Gohir.D12G159433 Gossypium hirsutum HOM05D002846 ORTHO05D002692 7.0e-15 84.3 117 49.6
Gorai.008G172600 Gossypium raimondii HOM05D002846 ORTHO05D002692 9.2e-15 84.0 117 49.6
FAN02G4078 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.2e-14 83.6 112 50.9
Nn1g03606 Nelumbo nucifera HOM05D002846 ORTHO05D002692 1.6e-14 83.2 126 51.6
Hma1.2p1_0948F.1_g240490 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 2.1e-14 82.8 117 51.3
FAN09G0250 Fragaria x ananassa HOM05D002846 ORTHO05D002692 2.7e-14 82.4 103 53.4
MBI18_g03004_MAGBIO Magnolia biondii HOM05D002846 ORTHO05D002692 7.8e-14 80.9 116 49.1
Nn1g07065 Nelumbo nucifera HOM05D002846 ORTHO05D002692 7.8e-14 80.9 109 49.5
QL08p033485 Quercus lobata HOM05D002846 ORTHO05D002692 1.0e-13 80.5 119 47.9
Peaxi162Scf00932g00218 Petunia axillaris HOM05D002846 ORTHO05D002692 1.3e-13 80.1 101 49.5
PGSC0003DMG400025494 Solanum tuberosum HOM05D002846 ORTHO05D002692 1.7e-13 79.7 105 49.5
CiPaw.04G116900 Carya illinoinensis HOM05D002846 ORTHO05D002692 2.3e-13 79.3 116 49.1
Peaxi162Scf00007g01016 Petunia axillaris HOM05D002846 ORTHO05D002692 2.3e-13 79.3 103 49.5
Nitab4.5_0001884g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 3.0e-13 79.0 98 52.0
PSO210G5289 Papaver somniferum HOM05D002846 ORTHO05D002692 3.0e-13 79.0 103 47.6
Peaxi162Scf00462g00005 Petunia axillaris HOM05D002846 ORTHO05D002692 3.9e-13 78.6 101 49.5
HPP92_004138 Vanilla planifolia HOM05D002846 ORTHO05D002692 8.6e-13 77.4 97 51.5
Eucgr.A01716 Eucalyptus grandis HOM05D002846 ORTHO05D002692 1.9e-12 76.3 96 44.8
RcHm_v2.0_Chr2g0159761 Rosa chinensis HOM05D002846 ORTHO05D002692 1.9e-12 76.3 104 51.0
vmacro12218 Vaccinium macrocarpon HOM05D002846 ORTHO05D002692 2.5e-12 75.9 116 45.7
ATR0697G184 Amborella trichopoda HOM05D002846 ORTHO05D002692 3.3e-12 75.5 100 51.0
EL10Ac9g20666 Beta vulgaris HOM05D002846 ORTHO05D002692 3.3e-12 75.5 133 38.3
TWI36G0639 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 7.3e-12 74.3 114 47.4
COL.COLO4_27687 Corchorus olitorius HOM05D002846 ORTHO05D002692 9.5e-12 73.9 77 61.0
RhsimUnG0010900 Rhododendron simsii HOM05D002846 ORTHO05D002692 1.6e-11 73.2 133 44.4
GSVIVG01001985001 Vitis vinifera HOM05D002846 ORTHO05D002692 1.6e-11 73.2 116 47.4
Nitab4.5_0000006g0090 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.1e-11 72.8 104 47.1
Thhalv10021505m.g Eutrema salsugineum HOM05D002846 ORTHO05D002692 2.8e-11 72.4 101 52.5
Sc12g0002340 Simmondsia chinensis HOM05D002846 ORTHO05D002692 2.8e-11 72.4 118 44.1
BcaB06g26277 Brassica carinata HOM05D002846 ORTHO05D002692 3.6e-11 72.0 101 51.5
A01p33250 Brassica napus HOM05D002846 ORTHO05D002692 3.6e-11 72.0 106 48.1
BraA01t03443Z Brassica rapa HOM05D002846 ORTHO05D002692 3.6e-11 72.0 106 48.1
PGSC0003DMG400005270 Solanum tuberosum HOM05D002846 ORTHO05D002692 3.6e-11 72.0 103 46.6
Hma1.2p1_0249F.1_g102340 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 6.2e-11 71.2 125 42.4
BcaC09g49107 Brassica carinata HOM05D002846 ORTHO05D002692 8.1e-11 70.9 106 47.2
BolC1t04204H Brassica oleracea HOM05D002846 ORTHO05D002692 8.1e-11 70.9 106 47.2
Cc05_g04910 Coffea canephora HOM05D002846 ORTHO05D002692 8.1e-11 70.9 118 45.8
CsaV3_7G003710 Cucumis sativus L. HOM05D002846 ORTHO05D002692 8.1e-11 70.9 129 39.5
A05p27020 Brassica napus HOM05D002846 ORTHO05D002692 1.1e-10 70.5 101 50.5
BraA05t21588Z Brassica rapa HOM05D002846 ORTHO05D002692 1.1e-10 70.5 101 50.5
Nitab4.5_0002083g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.1e-10 70.5 99 48.5
Rhsim06G0159700 Rhododendron simsii HOM05D002846 ORTHO05D002692 1.4e-10 70.1 129 44.2
Sed0021551 Sechium edule HOM05D002846 ORTHO05D002692 1.4e-10 70.1 117 37.6
C01p42460 Brassica napus HOM05D002846 ORTHO05D002692 1.8e-10 69.7 106 47.2
C05p41700 Brassica napus HOM05D002846 ORTHO05D002692 2.3e-10 69.3 101 50.5
BolC5t32905H Brassica oleracea HOM05D002846 ORTHO05D002692 2.3e-10 69.3 101 50.5
DCAR_019769 Daucus carota HOM05D002846 ORTHO05D002692 2.3e-10 69.3 114 46.5
Oeu036754.1 Olea europaea HOM05D002846 ORTHO05D002692 3.1e-10 68.9 116 44.8
Sp3g19720 Schrenkiella parvula HOM05D002846 ORTHO05D002692 5.2e-10 68.2 102 49.0
Aqoxy4G01970 Aquilegia oxysepala HOM05D002846 ORTHO05D002692 6.8e-10 67.8 101 46.5
AL3G35830 Arabidopsis lyrata HOM05D002846 ORTHO05D002692 6.8e-10 67.8 106 46.2
BcaC01g03489 Brassica carinata HOM05D002846 ORTHO05D002692 8.9e-10 67.4 109 45.9
A03p42420 Brassica napus HOM05D002846 ORTHO05D002692 8.9e-10 67.4 109 45.9
C03p51900 Brassica napus HOM05D002846 ORTHO05D002692 8.9e-10 67.4 109 45.9
BolC3t17475H Brassica oleracea HOM05D002846 ORTHO05D002692 8.9e-10 67.4 109 45.9
BraA03t13394Z Brassica rapa HOM05D002846 ORTHO05D002692 8.9e-10 67.4 109 45.9
Dinv40727 Davidia involucrata HOM05D002846 ORTHO05D002692 8.9e-10 67.4 129 45.7
Carub.0003s2176 Capsella rubella HOM05D002846 ORTHO05D002692 1.2e-09 67.0 103 47.6
Nitab4.5_0001176g0060 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.2e-09 67.0 104 47.1
BcaB04g20571 Brassica carinata HOM05D002846 ORTHO05D002692 1.5e-09 66.6 106 47.2
CSS0028377 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 1.5e-09 66.6 132 36.4
CAN.G1151.1 Capsicum annuum HOM05D002846 ORTHO05D002692 1.5e-09 66.6 117 42.7
CiPaw.03G161600 Carya illinoinensis HOM05D002846 ORTHO05D002692 1.5e-09 66.6 72 56.9
BcaC05g28139 Brassica carinata HOM05D002846 ORTHO05D002692 2.0e-09 66.2 100 50.0
CiPaw.02G060800 Carya illinoinensis HOM05D002846 ORTHO05D002692 2.0e-09 66.2 110 45.5
BcaB04g19182 Brassica carinata HOM05D002846 ORTHO05D002692 2.6e-09 65.9 109 44.0
Oeu027251.1 Olea europaea HOM05D002846 ORTHO05D002692 2.6e-09 65.9 116 41.4
PGR042G0859 Punica granatum HOM05D002846 ORTHO05D002692 3.4e-09 65.5 106 46.2
Potri.011G135700 Populus trichocarpa HOM05D002846 ORTHO05D002692 4.4e-09 65.1 128 40.6
QL08p012603 Quercus lobata HOM05D002846 ORTHO05D002692 4.4e-09 65.1 119 43.7
Cfa020399 Carpinus fangiana HOM05D002846 ORTHO05D002692 5.8e-09 64.7 120 45.8
Lj1A758T10 Lonicera japonica HOM05D002846 ORTHO05D002692 5.8e-09 64.7 115 43.5
Lalb_Chr14g0367581 Lupinus albus HOM05D002846 ORTHO05D002692 5.8e-09 64.7 129 43.4
MELO3C018808.2 Cucumis melo HOM05D002846 ORTHO05D002692 7.5e-09 64.3 115 40.9
HanXRQChr15g0496381 Helianthus annuus HOM05D002846 ORTHO05D002692 7.5e-09 64.3 135 42.2
Lalb_Chr19g0134811 Lupinus albus HOM05D002846 ORTHO05D002692 7.5e-09 64.3 98 45.9
ClCG02G001830 Citrullus lanatus HOM05D002846 ORTHO05D002692 9.9e-09 63.9 105 41.0
Actinidia27214 Actinidia chinensis HOM05D002846 ORTHO05D002692 1.3e-08 63.5 108 46.3
CARHR097660 Cardamine hirsuta HOM05D002846 ORTHO05D002692 1.3e-08 63.5 102 45.1
CiPaw.02G061000 Carya illinoinensis HOM05D002846 ORTHO05D002692 1.3e-08 63.5 110 43.6
Hma1.2p1_1344F.1_g277060 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 1.3e-08 63.5 117 43.6
AUR62025052 Chenopodium quinoa HOM05D002846 ORTHO05D002692 1.7e-08 63.2 126 39.7
Gohir.D01G063800 Gossypium hirsutum HOM05D002846 ORTHO05D002692 1.7e-08 63.2 137 38.7
Potri.001G419400 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.7e-08 63.2 115 45.2
Sabra11G0121900 Salix brachista HOM05D002846 ORTHO05D002692 1.7e-08 63.2 121 42.1
MSTRG.14152 Avicennia marina HOM05D002846 ORTHO05D002692 2.2e-08 62.8 116 45.7
CDE05G0092 Ceratophyllum demersum HOM05D062900 ORTHO05D002692 2.2e-08 62.8 101 44.6
Gorai.002G084300 Gossypium raimondii HOM05D002846 ORTHO05D002692 2.2e-08 62.8 137 38.7
Hund01143 Selenicereus undatus HOM05D002846 ORTHO05D002692 2.2e-08 62.8 113 40.7
AT3G21710 Arabidopsis thaliana HOM05D002846 ORTHO05D002692 2.9e-08 62.4 106 42.5
Gohir.A01G076300 Gossypium hirsutum HOM05D002846 ORTHO05D002692 2.9e-08 62.4 137 38.7
Peaxi162Scf00407g00210 Petunia axillaris HOM05D002846 ORTHO05D002692 2.9e-08 62.4 100 44.0
Psat7g153320 Pisum sativum HOM05D002846 ORTHO05D002692 3.7e-08 62.0 62 61.3
Sopen07g026090 Solanum pennellii HOM05D002846 ORTHO05D002692 3.7e-08 62.0 92 46.7
Haze_09635 Corylus avellana HOM05D002846 ORTHO05D002692 4.9e-08 61.6 122 43.4
Nitab4.5_0003509g0040 Nicotiana tabacum HOM05D002846 ORTHO05D002692 6.4e-08 61.2 111 40.5
Oeu041933.1 Olea europaea HOM05D002846 ORTHO05D002692 6.4e-08 61.2 98 46.9
Sabra16G0285000 Salix brachista HOM05D002846 ORTHO05D002692 8.3e-08 60.8 115 42.6
Solyc07g052460.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 8.3e-08 60.8 89 42.7
ECA233G0087 Erigeron canadensis HOM05D002846 ORTHO05D002692 1.1e-07 60.5 95 46.3
Solyc12g005820.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 1.1e-07 60.5 109 44.0
Sc01g0004150 Simmondsia chinensis HOM05D002846 ORTHO05D002692 1.4e-07 60.1 118 39.0
Sopen12g001770 Solanum pennellii HOM05D002846 ORTHO05D002692 1.4e-07 60.1 107 43.9
Medtr2g083300 Medicago truncatula HOM05D002846 ORTHO05D002692 1.9e-07 59.7 120 40.8
AUR62037135 Chenopodium quinoa HOM05D002846 ORTHO05D002692 2.4e-07 59.3 139 36.7
Ciclev10009727m.g Citrus clementina HOM05D002846 ORTHO05D002692 2.4e-07 59.3 122 39.3
MSTRG.6900 Avicennia marina HOM05D024717 ORTHO05D002692 4.1e-07 58.5 115 41.7
Nitab4.5_0015723g0010 Nicotiana tabacum HOM05D002846 ORTHO05D002692 4.1e-07 58.5 106 41.5
FvH4_3g22010 Fragaria vesca HOM05D002846 ORTHO05D002692 5.4e-07 58.2 128 38.3
Aa31LG8G8340 Aethionema arabicum HOM05D002846 ORTHO05D002692 7.1e-07 57.8 91 40.7
Lsat_1_v5_gn_5_5060 Lactuca sativa HOM05D002846 ORTHO05D002692 7.1e-07 57.8 107 41.1
CiPaw.12G127500 Carya illinoinensis HOM05D002846 ORTHO05D002692 9.2e-07 57.4 133 39.8
FAN25G2313 Fragaria x ananassa HOM05D002846 ORTHO05D002692 9.2e-07 57.4 130 39.2
TWI38G1873 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 9.2e-07 57.4 141 37.6
TWI38G2122 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 1.2e-06 57.0 138 37.7
Psat5g251520 Pisum sativum HOM05D002846 ORTHO05D002692 1.6e-06 56.6 120 37.5
SalBow1G8286 Salvia bowleyana HOM05D002846 ORTHO05D002692 4.6e-06 55.1 106 39.6
unitig_578.g16004 Utricularia gibba HOM05D024717 ORTHO05D002692 4.6e-06 55.1 109 44.0
Eucgr.F00971 Eucalyptus grandis HOM05D002846 ORTHO05D002692 6.0e-06 54.7 108 43.5


User provided reference genes

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