Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 4.5e-126 455.3 367 100.0
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 5.4e-71 272.3 361 79.8
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 2.5e-68 263.5 207 68.6
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 8.0e-67 258.5 208 68.8
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 4.9e-64 249.2 216 67.1
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 9.2e-63 245.0 213 67.6
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 2.7e-62 243.4 223 61.9
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 5.9e-62 242.3 194 68.0
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 7.8e-62 241.9 194 67.5
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 2.1e-59 233.8 180 67.2
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 4.0e-58 229.6 197 61.9
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 6.4e-56 222.2 182 66.5
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 8.9e-50 201.8 142 71.1
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 8.9e-42 175.3 182 48.4
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 1.2e-38 164.9 185 47.0
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 6.0e-38 162.5 178 47.8
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 1.7e-37 161.0 186 47.3
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 1.7e-37 161.0 177 48.6
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 8.6e-37 158.7 187 45.5
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 1.1e-36 158.3 188 44.1
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 1.9e-36 157.5 181 43.1
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.9e-36 157.5 197 45.7
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 7.3e-36 155.6 187 44.4
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 1.2e-35 154.8 195 46.2
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.6e-35 154.5 176 44.9
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.6e-35 154.5 176 44.9
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 2.1e-35 154.1 186 45.2
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 3.6e-35 153.3 184 46.2
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 8.1e-35 152.1 183 43.2
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 3.1e-34 150.2 165 47.9
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 4.0e-34 149.8 186 41.9
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 6.8e-34 149.1 176 44.3
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 8.9e-34 148.7 182 44.5
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 2.0e-33 147.5 167 47.9
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 2.0e-33 147.5 194 43.3
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 1.3e-32 144.8 177 44.6
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 1.1e-31 141.7 171 45.6
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.9e-31 141.0 185 41.6
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 1.9e-31 141.0 154 48.7
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 1.9e-31 141.0 179 43.6
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 4.1e-31 139.8 191 38.7
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 4.1e-31 139.8 154 48.7
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 1.2e-30 138.3 187 38.0
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 4.6e-30 136.3 204 36.8
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 7.8e-30 135.6 184 42.4
Glyma.12G201200 Glycine max HOM05D007281 ORTHO05D009241 1.0e-29 135.2 211 94.3
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 2.3e-29 134.0 210 39.5
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 1.9e-28 131.0 196 39.3
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 9.6e-28 128.6 164 43.9
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 2.1e-27 127.5 176 37.5
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 2.1e-27 127.5 176 37.5
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 3.6e-27 126.7 219 33.8
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 3.6e-27 126.7 168 38.7
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 1.1e-26 125.2 179 41.9
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 1.1e-26 125.2 191 38.7
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 1.4e-26 124.8 169 36.7
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 1.8e-26 124.4 186 35.5
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 4.0e-26 123.2 144 43.1
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 5.2e-26 122.9 185 37.8
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 6.9e-26 122.5 168 38.1
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 9.0e-26 122.1 185 38.4
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 9.0e-26 122.1 168 37.5
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 1.5e-25 121.3 194 39.2
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 1.3e-24 118.2 128 46.9
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 2.2e-24 117.5 176 40.3
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 8.4e-24 115.5 220 35.0
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 1.1e-23 115.2 178 39.3
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 3.2e-23 113.6 192 33.3
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 1.2e-22 111.7 178 37.6
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 1.6e-22 111.3 175 38.3
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 3.5e-22 110.2 172 37.8
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 4.6e-22 109.8 175 38.9
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 4.6e-22 109.8 175 38.9
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 1.0e-21 108.6 172 37.2
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 1.3e-21 108.2 163 35.6
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 1.3e-21 108.2 168 35.1
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 2.3e-21 107.5 169 34.3
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 3.0e-21 107.1 176 35.2
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 4.3e-20 103.2 115 46.1
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 1.6e-19 101.3 147 40.8
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 3.6e-19 100.1 173 35.8
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 1.1e-18 98.6 165 29.7
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 4.0e-18 96.7 174 37.4
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 5.3e-18 96.3 149 38.3
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 5.8e-17 92.8 172 34.9
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 2.2e-16 90.9 157 35.0
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 4.2e-15 86.7 152 36.8
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 2.1e-14 84.3 148 31.8
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 3.5e-14 83.6 98 42.9
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 6.0e-14 82.8 132 37.1
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 1.3e-13 81.6 164 31.7
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 8.7e-13 79.0 128 34.4
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 3.3e-12 77.0 161 30.4
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 3.3e-12 77.0 196 28.1
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 9.6e-12 75.5 126 33.3
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 1.3e-11 75.1 127 34.6
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.3e-11 75.1 127 34.6
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.3e-11 75.1 162 30.2
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 1.6e-11 74.7 162 30.2
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 1.1e-10 72.0 100 39.0
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.4e-10 71.6 161 29.2


User provided reference genes

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